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The map label for this gene is yddE [C]

Identifier: 54293165

GI number: 54293165

Start: 237456

End: 238250

Strand: Direct

Name: yddE [C]

Synonym: lpl0211

Alternate gene names: 54293165

Gene position: 237456-238250 (Clockwise)

Preceding gene: 54293162

Following gene: 54293166

Centisome position: 7.1

GC content: 41.89

Gene sequence:

>795_bases
ATGAAAAAAATCAAAATATATCAGGTGGATGCGTTTGCTTCTTCTATTTTTAGCGGTAACCCCGCAGCTGTATGTGTCCT
GGACGAATGGTTAAGCGAGGAACAAATGCAATTCATTGCCTCTGAAAACAACCTGTCTGAAACCGCATTCGTAGTGCCGA
ATCAAGGAAATTTTGATATTCGCTGGTTCACACCCGCTACTGAGGTGGATTTGTGTGGGCATGCCACTTTGGCAAGTGCT
TACATTTTATTTGAAAAATTGGGCTACAAAAGTTCGGAAATAATTTTTCAAAGTAAAAGCGGGATGCTTCGTGTGACCGG
ACAAAATCAGCAATTACAATTGGATTTTCCAGCTTTGCCTTACCACCGAATTACACCGACCAGAGTGTTATTGGATGCTT
TGAAAATAAAACCTCAAGAAGTATACGAAAGCACATTTGATTTATTATGTGTTTATCCGCATGAATCGGACGTGGCAGAG
GCAGTCCCTGATTTACTTGCATTAAGCCAATTACCCTATCGCGGCATTATTATTACATCACTATGTGGGGATGGTTCAGT
ATACTCTCGCTGTTTTTATCCTGCCTGCAATGTACCAGAGGATCCGGTCACAGGCTCTGCTCACTGCGTCATAGCGCCTT
TTTGGTGTGCTCGTTTGAATCAGCCCCTTATCAGAGCAAGGCAAGGGCTAAAACGCCAGGGCGAATTATTATGCGAATTA
AATGGCAATCGTGTTCTTTTAACGGGTACTTGCCATTTGTATTTAGAAGGTAATATTTACATCCCAGAGATTTAA

Upstream 100 bases:

>100_bases
CACAATAAAGCATGGCAGTTGGCTGGCCAATTGCATAGCTTGCTATATATTAGTAAGCTATGTTAACATAAAATATGTTT
TATGAACAAATGAGCTGAGT

Downstream 100 bases:

>100_bases
TATGAAAAAAATAGCAACTTACACTATACAAGATTGGCTTTTTTCCATCGCGAATGGCCGATTTGACATTGATTTGGCAG
AGAGTGGGATCCAACCACAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MKKIKIYQVDAFASSIFSGNPAAVCVLDEWLSEEQMQFIASENNLSETAFVVPNQGNFDIRWFTPATEVDLCGHATLASA
YILFEKLGYKSSEIIFQSKSGMLRVTGQNQQLQLDFPALPYHRITPTRVLLDALKIKPQEVYESTFDLLCVYPHESDVAE
AVPDLLALSQLPYRGIIITSLCGDGSVYSRCFYPACNVPEDPVTGSAHCVIAPFWCARLNQPLIRARQGLKRQGELLCEL
NGNRVLLTGTCHLYLEGNIYIPEI

Sequences:

>Translated_264_residues
MKKIKIYQVDAFASSIFSGNPAAVCVLDEWLSEEQMQFIASENNLSETAFVVPNQGNFDIRWFTPATEVDLCGHATLASA
YILFEKLGYKSSEIIFQSKSGMLRVTGQNQQLQLDFPALPYHRITPTRVLLDALKIKPQEVYESTFDLLCVYPHESDVAE
AVPDLLALSQLPYRGIIITSLCGDGSVYSRCFYPACNVPEDPVTGSAHCVIAPFWCARLNQPLIRARQGLKRQGELLCEL
NGNRVLLTGTCHLYLEGNIYIPEI
>Mature_264_residues
MKKIKIYQVDAFASSIFSGNPAAVCVLDEWLSEEQMQFIASENNLSETAFVVPNQGNFDIRWFTPATEVDLCGHATLASA
YILFEKLGYKSSEIIFQSKSGMLRVTGQNQQLQLDFPALPYHRITPTRVLLDALKIKPQEVYESTFDLLCVYPHESDVAE
AVPDLLALSQLPYRGIIITSLCGDGSVYSRCFYPACNVPEDPVTGSAHCVIAPFWCARLNQPLIRARQGLKRQGELLCEL
NGNRVLLTGTCHLYLEGNIYIPEI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=289, Percent_Identity=34.6020761245675, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI74316009, Length=270, Percent_Identity=34.0740740740741, Blast_Score=135, Evalue=5e-32,
Organism=Escherichia coli, GI1787737, Length=228, Percent_Identity=32.8947368421053, Blast_Score=95, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17542160, Length=311, Percent_Identity=32.7974276527331, Blast_Score=127, Evalue=6e-30,
Organism=Caenorhabditis elegans, GI17542154, Length=311, Percent_Identity=32.7974276527331, Blast_Score=127, Evalue=6e-30,
Organism=Caenorhabditis elegans, GI17542158, Length=311, Percent_Identity=30.5466237942122, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17542152, Length=311, Percent_Identity=30.5466237942122, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6321818, Length=288, Percent_Identity=26.0416666666667, Blast_Score=76, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29472; Mature: 29472

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIKIYQVDAFASSIFSGNPAAVCVLDEWLSEEQMQFIASENNLSETAFVVPNQGNFDI
CCEEEEEEEHHHHHHHHCCCCEEEEEEHHHCCHHHHHHHHCCCCCCCEEEEECCCCCEEE
RWFTPATEVDLCGHATLASAYILFEKLGYKSSEIIFQSKSGMLRVTGQNQQLQLDFPALP
EEECCCCCEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCEEEEECCCCC
YHRITPTRVLLDALKIKPQEVYESTFDLLCVYPHESDVAEAVPDLLALSQLPYRGIIITS
CCCCCHHHHHHHHHHCCHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEE
LCGDGSVYSRCFYPACNVPEDPVTGSAHCVIAPFWCARLNQPLIRARQGLKRQGELLCEL
ECCCCCHHHEEECCCCCCCCCCCCCCCCEEEEEHHHHHCCCHHHHHHHCCCCCCCEEEEE
NGNRVLLTGTCHLYLEGNIYIPEI
CCCEEEEEEEEEEEEECCEEECCC
>Mature Secondary Structure
MKKIKIYQVDAFASSIFSGNPAAVCVLDEWLSEEQMQFIASENNLSETAFVVPNQGNFDI
CCEEEEEEEHHHHHHHHCCCCEEEEEEHHHCCHHHHHHHHCCCCCCCEEEEECCCCCEEE
RWFTPATEVDLCGHATLASAYILFEKLGYKSSEIIFQSKSGMLRVTGQNQQLQLDFPALP
EEECCCCCEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCEEEEECCCCC
YHRITPTRVLLDALKIKPQEVYESTFDLLCVYPHESDVAEAVPDLLALSQLPYRGIIITS
CCCCCHHHHHHHHHHCCHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEE
LCGDGSVYSRCFYPACNVPEDPVTGSAHCVIAPFWCARLNQPLIRARQGLKRQGELLCEL
ECCCCCHHHEEECCCCCCCCCCCCCCCCEEEEEHHHHHCCCHHHHHHHCCCCCCCEEEEE
NGNRVLLTGTCHLYLEGNIYIPEI
CCCEEEEEEEEEEEEECCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]