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The map label for this gene is rpsF

Identifier: 54020446

GI number: 54020446

Start: 352461

End: 353186

Strand: Reverse

Name: rpsF

Synonym: mhp307

Alternate gene names: 54020446

Gene position: 353186-352461 (Counterclockwise)

Preceding gene: 54020447

Following gene: 54020445

Centisome position: 39.56

GC content: 31.68

Gene sequence:

>726_bases
ATGCCTAAATACGAAATTATGACAATTTTAGATCCAAAAGCAGAAATGGCAATTATTGATAATTTGCTTAAAACTGTTTT
TGGCGATAATTCAACAGAAAAATTACGTAAACTTGAAACAACAAATCTTGCTTACCCGATAAGAAAATCAAAAATTGCGC
AATACTTTTTAGTAGATTTAAATGCTCCAACTAATTTAATCGAGGAATTTGTACGTCGGGCAAATATCACAAGAGAAATT
TGGCGATATCTAATTGTGAATCTTGATAGTGAAAAAGGTCTAAATAAAAAACCAAAAATTCGTGAGCGGAACAGAAAATA
CACACCTAGACGTGATCGTTTTGAGAAGCCAAATTTTCGGGGAAATCCTAAATCACGTTTTGATCAACAAGACCAACAAG
CAACAAAAAATCAACAGAATTTTCAGCAAAATCAGCAAAATCAAACTAGTCAATATCGAGAAAATAGCAGGCAAAATCAA
GATGATTTCCAACAAGTGAGCAGCAATCAACAGAATTTCGGGCAAAATCAACAAAATCAAAGCGGTTATCATCGTGAGAA
TAACCGCCAAAATCAAGAAAATATACACCAAAATAGCAAAAATCACCAAAATCAAACTAGTCAAACTCAGCGAAATCGCC
GACAATATCAACCCATAAAAAATCCAAAATTTAATCAAAAAGAAAAAGAAAACTATAATAATAAAAAACCACAAAGTTCA
AACTAA

Upstream 100 bases:

>100_bases
GTGTTATAATTTGTATACAAATTTAAAAAAATTATAAACTAGCTTTTTAATTATTATCCTTGGTTAGTTTTTCTAACCCA
TAAGTCCAAAAGGAGAAAAA

Downstream 100 bases:

>100_bases
AATTATTATTAACAACGATGAACAAAGTTATTTTAATTGGTAGGGTTTCTTCAAGACCGATTTTGTTAAATACAAAATCT
AATGTACCGTTTTTGCGGTT

Product: 30S ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MPKYEIMTILDPKAEMAIIDNLLKTVFGDNSTEKLRKLETTNLAYPIRKSKIAQYFLVDLNAPTNLIEEFVRRANITREI
WRYLIVNLDSEKGLNKKPKIRERNRKYTPRRDRFEKPNFRGNPKSRFDQQDQQATKNQQNFQQNQQNQTSQYRENSRQNQ
DDFQQVSSNQQNFGQNQQNQSGYHRENNRQNQENIHQNSKNHQNQTSQTQRNRRQYQPIKNPKFNQKEKENYNNKKPQSS
N

Sequences:

>Translated_241_residues
MPKYEIMTILDPKAEMAIIDNLLKTVFGDNSTEKLRKLETTNLAYPIRKSKIAQYFLVDLNAPTNLIEEFVRRANITREI
WRYLIVNLDSEKGLNKKPKIRERNRKYTPRRDRFEKPNFRGNPKSRFDQQDQQATKNQQNFQQNQQNQTSQYRENSRQNQ
DDFQQVSSNQQNFGQNQQNQSGYHRENNRQNQENIHQNSKNHQNQTSQTQRNRRQYQPIKNPKFNQKEKENYNNKKPQSS
N
>Mature_240_residues
PKYEIMTILDPKAEMAIIDNLLKTVFGDNSTEKLRKLETTNLAYPIRKSKIAQYFLVDLNAPTNLIEEFVRRANITREIW
RYLIVNLDSEKGLNKKPKIRERNRKYTPRRDRFEKPNFRGNPKSRFDQQDQQATKNQQNFQQNQQNQTSQYRENSRQNQD
DFQQVSSNQQNFGQNQQNQSGYHRENNRQNQENIHQNSKNHQNQTSQTQRNRRQYQPIKNPKFNQKEKENYNNKKPQSSN

Specific function: Binds together with S18 to 16S ribosomal RNA

COG id: COG0360

COG function: function code J; Ribosomal protein S6

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6_MYCH2 (Q600Z6)

Other databases:

- EMBL:   AE017332
- RefSeq:   YP_115819.1
- ProteinModelPortal:   Q600Z6
- SMR:   Q600Z6
- STRING:   Q600Z6
- GeneID:   3105383
- GenomeReviews:   AE017332_GR
- KEGG:   mhy:mhp307
- eggNOG:   COG0360
- HOGENOM:   HBG128968
- OMA:   RRANITR
- ProtClustDB:   PRK00453
- BioCyc:   MHYO295358:MHP307-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00360
- InterPro:   IPR000529
- InterPro:   IPR020814
- InterPro:   IPR014717
- Gene3D:   G3DSA:3.30.70.60

Pfam domain/function: PF01250 Ribosomal_S6; SSF54995 Ribosomal_S6

EC number: NA

Molecular weight: Translated: 29008; Mature: 28877

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: PS01048 RIBOSOMAL_S6

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKYEIMTILDPKAEMAIIDNLLKTVFGDNSTEKLRKLETTNLAYPIRKSKIAQYFLVDL
CCCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHEEEC
NAPTNLIEEFVRRANITREIWRYLIVNLDSEKGLNKKPKIRERNRKYTPRRDRFEKPNFR
CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHCCCCCCCC
GNPKSRFDQQDQQATKNQQNFQQNQQNQTSQYRENSRQNQDDFQQVSSNQQNFGQNQQNQ
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCCCCCC
SGYHRENNRQNQENIHQNSKNHQNQTSQTQRNRRQYQPIKNPKFNQKEKENYNNKKPQSS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
N
C
>Mature Secondary Structure 
PKYEIMTILDPKAEMAIIDNLLKTVFGDNSTEKLRKLETTNLAYPIRKSKIAQYFLVDL
CCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHEEEC
NAPTNLIEEFVRRANITREIWRYLIVNLDSEKGLNKKPKIRERNRKYTPRRDRFEKPNFR
CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHCCCCCCCC
GNPKSRFDQQDQQATKNQQNFQQNQQNQTSQYRENSRQNQDDFQQVSSNQQNFGQNQQNQ
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCCCCCC
SGYHRENNRQNQENIHQNSKNHQNQTSQTQRNRRQYQPIKNPKFNQKEKENYNNKKPQSS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA