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The map label for this gene is ssb [H]

Identifier: 54020445

GI number: 54020445

Start: 351883

End: 352443

Strand: Reverse

Name: ssb [H]

Synonym: mhp306

Alternate gene names: 54020445

Gene position: 352443-351883 (Counterclockwise)

Preceding gene: 54020446

Following gene: 54020444

Centisome position: 39.48

GC content: 33.87

Gene sequence:

>561_bases
ATGAACAAAGTTATTTTAATTGGTAGGGTTTCTTCAAGACCGATTTTGTTAAATACAAAATCTAATGTACCGTTTTTGCG
GTTTAGTCTTGCTGTTTCCCGTCGAAGATATAGTCAAGATGCTACTCCAATAACTGATTTTATTCCAATTGTTGCTTGAA
GACAAAACGCAACTTTATTAGAACGATTAATCACAGTTGGAACTCTAATCGCACTTGAAGGCAGTATCCAGGGAAATCGG
GTAATGAATAATACAAATGCTTATTTGACGAATTATGAAGTAAATGTTGATTCATTTCAACCACTTGAGACAAAAGAACA
ACTTGAAATTAGACGGCAAAAGTTGAGCCAAAAAATATCAGAACCAACTTTTGAACCTATTTATGATGATAATCAGGTAG
GTCTTGAAATCCCCGAACACGATCAAGAATTACCGGATGAATCACAAAACTCTGATTTTCCAAGTTTTTTAGCTGATAAG
AATAAAAACAATTCTCAAGACGATGAAGATCCTTTTGCTGACTGAGATCTTTCTGATATTGAACCAGATAATGATGACTA
A

Upstream 100 bases:

>100_bases
AATATCAACCCATAAAAAATCCAAAATTTAATCAAAAAGAAAAAGAAAACTATAATAATAAAAAACCACAAAGTTCAAAC
TAAAATTATTATTAACAACG

Downstream 100 bases:

>100_bases
ATTATAAAGGAGTTAAAATGAATAAAAAATACGCGAAAAAATTCAAAAAAAAACCATGTCAATTTTGTGAGGCTAAATTA
TTTTATATTGACTATAAAGA

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MNKVILIGRVSSRPILLNTKSNVPFLRFSLAVSRRRYSQDATPITDFIPIVAWRQNATLLERLITVGTLIALEGSIQGNR
VMNNTNAYLTNYEVNVDSFQPLETKEQLEIRRQKLSQKISEPTFEPIYDDNQVGLEIPEHDQELPDESQNSDFPSFLADK
NKNNSQDDEDPFADWDLSDIEPDNDD

Sequences:

>Translated_186_residues
MNKVILIGRVSSRPILLNTKSNVPFLRFSLAVSRRRYSQDATPITDFIPIVA*RQNATLLERLITVGTLIALEGSIQGNR
VMNNTNAYLTNYEVNVDSFQPLETKEQLEIRRQKLSQKISEPTFEPIYDDNQVGLEIPEHDQELPDESQNSDFPSFLADK
NKNNSQDDEDPFAD*DLSDIEPDNDD
>Mature_186_residues
MNKVILIGRVSSRPILLNTKSNVPFLRFSLAVSRRRYSQDATPITDFIPIVA*RQNATLLERLITVGTLIALEGSIQGNR
VMNNTNAYLTNYEVNVDSFQPLETKEQLEIRRQKLSQKISEPTFEPIYDDNQVGLEIPEHDQELPDESQNSDFPSFLADK
NKNNSQDDEDPFAD*DLSDIEPDNDD

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 20890; Mature: 20890

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKVILIGRVSSRPILLNTKSNVPFLRFSLAVSRRRYSQDATPITDFIPIVARQNATLLE
CCCEEEEEECCCCCEEEECCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHH
RLITVGTLIALEGSIQGNRVMNNTNAYLTNYEVNVDSFQPLETKEQLEIRRQKLSQKISE
HHHHHHHHEEEECCCCCCEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
PTFEPIYDDNQVGLEIPEHDQELPDESQNSDFPSFLADKNKNNSQDDEDPFADDLSDIEP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHCCC
DNDD
CCCC
>Mature Secondary Structure
MNKVILIGRVSSRPILLNTKSNVPFLRFSLAVSRRRYSQDATPITDFIPIVARQNATLLE
CCCEEEEEECCCCCEEEECCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHH
RLITVGTLIALEGSIQGNRVMNNTNAYLTNYEVNVDSFQPLETKEQLEIRRQKLSQKISE
HHHHHHHHEEEECCCCCCEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
PTFEPIYDDNQVGLEIPEHDQELPDESQNSDFPSFLADKNKNNSQDDEDPFADDLSDIEP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHCCC
DNDD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11353084 [H]