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The map label for this gene is rbgA

Identifier: 54020438

GI number: 54020438

Start: 336367

End: 337185

Strand: Reverse

Name: rbgA

Synonym: mhp294

Alternate gene names: 54020438

Gene position: 337185-336367 (Counterclockwise)

Preceding gene: 54020439

Following gene: 54020437

Centisome position: 37.77

GC content: 26.5

Gene sequence:

>819_bases
ATGAAAATAAATTGATTTCCAGGTCATATGGCAAAAAGCATAAATGACATAGAAAATAAAGCGCGAATAGCAGATCTTTT
TATTTTAATTGTGGATGGGAGATGCCCTATTTCTAGTCTAAATGAGAATTTTTTGCAGATTGCAAAACAAAAAATGACAC
TAGTAATAGTAACAAAAATTGATTTAGCTGATAAAAATAAATTCACTAAAATAAAAAAATTTTTTACGGATAAAAAATTT
TTTATTCTCTTTGTAAATTTACGAGATTATTCAGCTAGATTAAAAATTCTATCACATTTAAATAAAATATTTAAAATAAA
ACAAGAAAAAAATTCAACTAAATTTTTTTCGCCAAGTCTAAAATGTTTTGTTGTCGGAGTGCCTAACACTGGAAAATCAA
CGCTAATAAATTTAATCACAAAATCACAACTAAAGGTAGGAAACCAACCGGGAATAACGAGAAATAATCAATGAATTAGC
TATGATAAATTTCTTTTTCTTGACACCCCAGGTATCCTATTGCCAAAAATGAACGATCAAATTTTAGCCGTAAAATTAGC
TATTATTGGTTTGATAAGGTGGGAAATTCTAAATATTAGCGATCTTTTTATTGAAGCATACAAAATAATTTCTGAACAAT
ATCCAAATTTTATTACAGATTTAAAACTAAAACCCTCACTAATTGATTCAGAGATTGAAGAAAACTTGTTGATTTTGTCC
AAAAATAAAAAATTTATAAATAAAAATGGTCTAGATTTGCCTCGCTGTCGAAGATGATTTTTAATGCATATTGGCAAACA
AAAAATTACACTAGATTAA

Upstream 100 bases:

>100_bases
TGACCACAAGCTTAGAAGGCTCGTGCTCTATCCTACTGAGCTACGTGACCACGCCTAAATAATTATACCATTTTTTATTT
ATAATTTATAATTATTTAAT

Downstream 100 bases:

>100_bases
TTTTTTTAAGAAAACTAAAGTTCATTAAAAAAATTTTTTAGAATAGTTAATTTTTAAAAAGATCTAAATTACTATATTAA
TTTAGATGCAAAAATGCCGT

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MKINWFPGHMAKSINDIENKARIADLFILIVDGRCPISSLNENFLQIAKQKMTLVIVTKIDLADKNKFTKIKKFFTDKKF
FILFVNLRDYSARLKILSHLNKIFKIKQEKNSTKFFSPSLKCFVVGVPNTGKSTLINLITKSQLKVGNQPGITRNNQWIS
YDKFLFLDTPGILLPKMNDQILAVKLAIIGLIRWEILNISDLFIEAYKIISEQYPNFITDLKLKPSLIDSEIEENLLILS
KNKKFINKNGLDLPRCRRWFLMHIGKQKITLD

Sequences:

>Translated_272_residues
MKIN*FPGHMAKSINDIENKARIADLFILIVDGRCPISSLNENFLQIAKQKMTLVIVTKIDLADKNKFTKIKKFFTDKKF
FILFVNLRDYSARLKILSHLNKIFKIKQEKNSTKFFSPSLKCFVVGVPNTGKSTLINLITKSQLKVGNQPGITRNNQ*IS
YDKFLFLDTPGILLPKMNDQILAVKLAIIGLIRWEILNISDLFIEAYKIISEQYPNFITDLKLKPSLIDSEIEENLLILS
KNKKFINKNGLDLPRCRR*FLMHIGKQKITLD
>Mature_272_residues
MKIN*FPGHMAKSINDIENKARIADLFILIVDGRCPISSLNENFLQIAKQKMTLVIVTKIDLADKNKFTKIKKFFTDKKF
FILFVNLRDYSARLKILSHLNKIFKIKQEKNSTKFFSPSLKCFVVGVPNTGKSTLINLITKSQLKVGNQPGITRNNQ*IS
YDKFLFLDTPGILLPKMNDQILAVKLAIIGLIRWEILNISDLFIEAYKIISEQYPNFITDLKLKPSLIDSEIEENLLILS
KNKKFINKNGLDLPRCRR*FLMHIGKQKITLD

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=199, Percent_Identity=30.6532663316583, Blast_Score=93, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI193211047, Length=204, Percent_Identity=29.4117647058824, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6323744, Length=220, Percent_Identity=29.0909090909091, Blast_Score=66, Evalue=6e-12,
Organism=Drosophila melanogaster, GI85815858, Length=245, Percent_Identity=28.9795918367347, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 30907; Mature: 30907

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINFPGHMAKSINDIENKARIADLFILIVDGRCPISSLNENFLQIAKQKMTLVIVTKID
CEECCCCHHHHHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHCEEEEEEEEEC
LADKNKFTKIKKFFTDKKFFILFVNLRDYSARLKILSHLNKIFKIKQEKNSTKFFSPSLK
CCCCCHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCE
CFVVGVPNTGKSTLINLITKSQLKVGNQPGITRNNQISYDKFLFLDTPGILLPKMNDQIL
EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEECCCCCHHH
AVKLAIIGLIRWEILNISDLFIEAYKIISEQYPNFITDLKLKPSLIDSEIEENLLILSKN
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHCCEEEEECC
KKFINKNGLDLPRCRRFLMHIGKQKITLD
CCEECCCCCCHHHHHHHHHHCCCCEEECC
>Mature Secondary Structure
MKINFPGHMAKSINDIENKARIADLFILIVDGRCPISSLNENFLQIAKQKMTLVIVTKID
CEECCCCHHHHHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHCEEEEEEEEEC
LADKNKFTKIKKFFTDKKFFILFVNLRDYSARLKILSHLNKIFKIKQEKNSTKFFSPSLK
CCCCCHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCE
CFVVGVPNTGKSTLINLITKSQLKVGNQPGITRNNQISYDKFLFLDTPGILLPKMNDQIL
EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEECCCCCHHH
AVKLAIIGLIRWEILNISDLFIEAYKIISEQYPNFITDLKLKPSLIDSEIEENLLILSKN
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHCCEEEEECC
KKFINKNGLDLPRCRRFLMHIGKQKITLD
CCEECCCCCCHHHHHHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]