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The map label for this gene is yabB [H]

Identifier: 54020189

GI number: 54020189

Start: 486489

End: 487259

Strand: Direct

Name: yabB [H]

Synonym: mhp409

Alternate gene names: 54020189

Gene position: 486489-487259 (Clockwise)

Preceding gene: 54020188

Following gene: 54020190

Centisome position: 54.49

GC content: 29.57

Gene sequence:

>771_bases
ATGAAAAATAATCTTGAACTGAATAATTTAGGTTATAATGACGATCTAAAAATTTGACAAGATAAAACTAGCTTTAATTA
TTCAGTTGATACAATTTTGCTCGGAAATTTCCTTACTTTATCAAAAAAAATTAAAAAAGCACTAGAAATTGGCACAAATA
ATGGCGCTTTGGCAATTTTAGTTGCTCATCGCAAATCTTTGCTTGAAATTGATGCACTCGAAATTAATGAAAACGCTATA
AAAATAGCCCAAAAAAATGTTGAACTAAACAAAAAAGGTTCACAAATCAGGCTTATTCATATGGATTTTAACCATTTTTG
ACCTTTGCATAATCAAAAACAGTTGCAAAAATATGACCTAATTTTTGCAAATCCGCCTTATTTTAAAATCGGAACTAAAA
AATTAAAAAAGGTTAATTCCGATTTTTTAAATGCCATCTATGAATTTAGTCTTAATTTATCACAGTTGATTTCAGGTGCA
AGTAAAATTATCCAACAAAAAGGCAAGCTTGCATTAGTCTTGCCAATTGAACGTTTTGTTGATCTAATTGAACTATTAAG
AGAAAATCATTTTGAACCCAAAAAAATTCAGTTTATAATGACCCGGGTTGGCTCAAGTCCCAAATTTGCACTGGTTGAAT
CGGAATTTAAAGGGCAATGAGGGACAAACTATCTTCATAATCTTTATCTTCACCCGCAAAATAAAAATTTACATATCTAT
CGTAGAGAAATTCAAAGATTATATGTTGCAAGAAAGGTCAAAGATGACTAA

Upstream 100 bases:

>100_bases
CGGCACCATTTTAGTGCTGATGCTACCGTTTTAAACAATGAAAAAATCGCTAAGTTTGGCCGCTTTTATCGAAAAAATCC
AAAATTAATCAGTCTTGTTA

Downstream 100 bases:

>100_bases
AAAATGTTATATCACAACTCCAATTTATTATGCTAGCGGGAGACTCCATATTGGGCATCTTTATACAACAGTGCTTGCTT
GAGTAATTAGAAATTTTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MKNNLELNNLGYNDDLKIWQDKTSFNYSVDTILLGNFLTLSKKIKKALEIGTNNGALAILVAHRKSLLEIDALEINENAI
KIAQKNVELNKKGSQIRLIHMDFNHFWPLHNQKQLQKYDLIFANPPYFKIGTKKLKKVNSDFLNAIYEFSLNLSQLISGA
SKIIQQKGKLALVLPIERFVDLIELLRENHFEPKKIQFIMTRVGSSPKFALVESEFKGQWGTNYLHNLYLHPQNKNLHIY
RREIQRLYVARKVKDD

Sequences:

>Translated_256_residues
MKNNLELNNLGYNDDLKI*QDKTSFNYSVDTILLGNFLTLSKKIKKALEIGTNNGALAILVAHRKSLLEIDALEINENAI
KIAQKNVELNKKGSQIRLIHMDFNHF*PLHNQKQLQKYDLIFANPPYFKIGTKKLKKVNSDFLNAIYEFSLNLSQLISGA
SKIIQQKGKLALVLPIERFVDLIELLRENHFEPKKIQFIMTRVGSSPKFALVESEFKGQ*GTNYLHNLYLHPQNKNLHIY
RREIQRLYVARKVKDD
>Mature_256_residues
MKNNLELNNLGYNDDLKI*QDKTSFNYSVDTILLGNFLTLSKKIKKALEIGTNNGALAILVAHRKSLLEIDALEINENAI
KIAQKNVELNKKGSQIRLIHMDFNHF*PLHNQKQLQKYDLIFANPPYFKIGTKKLKKVNSDFLNAIYEFSLNLSQLISGA
SKIIQQKGKLALVLPIERFVDLIELLRENHFEPKKIQFIMTRVGSSPKFALVESEFKGQ*GTNYLHNLYLHPQNKNLHIY
RREIQRLYVARKVKDD

Specific function: Unknown

COG id: COG4123

COG function: function code R; Predicted O-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082131, Length=170, Percent_Identity=27.0588235294118, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007848 [H]

Pfam domain/function: PF05175 MTS [H]

EC number: NA

Molecular weight: Translated: 29176; Mature: 29176

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNLELNNLGYNDDLKIQDKTSFNYSVDTILLGNFLTLSKKIKKALEIGTNNGALAILV
CCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEE
AHRKSLLEIDALEINENAIKIAQKNVELNKKGSQIRLIHMDFNHFPLHNQKQLQKYDLIF
ECCCCCEEEEEEEECCCCEEEECCCCEECCCCCEEEEEEEECCCCCCCCHHHHHHEEEEE
ANPPYFKIGTKKLKKVNSDFLNAIYEFSLNLSQLISGASKIIQQKGKLALVLPIERFVDL
CCCCEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHH
IELLRENHFEPKKIQFIMTRVGSSPKFALVESEFKGQGTNYLHNLYLHPQNKNLHIYRRE
HHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEHHHHH
IQRLYVARKVKDD
HHHHHHHHHCCCC
>Mature Secondary Structure
MKNNLELNNLGYNDDLKIQDKTSFNYSVDTILLGNFLTLSKKIKKALEIGTNNGALAILV
CCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEE
AHRKSLLEIDALEINENAIKIAQKNVELNKKGSQIRLIHMDFNHFPLHNQKQLQKYDLIF
ECCCCCEEEEEEEECCCCEEEECCCCEECCCCCEEEEEEEECCCCCCCCHHHHHHEEEEE
ANPPYFKIGTKKLKKVNSDFLNAIYEFSLNLSQLISGASKIIQQKGKLALVLPIERFVDL
CCCCEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHH
IELLRENHFEPKKIQFIMTRVGSSPKFALVESEFKGQGTNYLHNLYLHPQNKNLHIYRRE
HHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEHHHHH
IQRLYVARKVKDD
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]