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The map label for this gene is ycfF [C]

Identifier: 54020160

GI number: 54020160

Start: 432368

End: 432700

Strand: Direct

Name: ycfF [C]

Synonym: mhp365

Alternate gene names: 54020160

Gene position: 432368-432700 (Clockwise)

Preceding gene: 54020159

Following gene: 54020161

Centisome position: 48.43

GC content: 24.92

Gene sequence:

>333_bases
ATGGAAAATACTACTTTATTTCTAGATATAATTGCAAAAAAATTACCAGCAAAAATAATTTATGAAGATGAAAAAGTTAT
TGCTTTTTATGATAAATTTCCAGTTTCACCAGGTCATTTTTTGGTTGTGCCAAAAAATTATTCACGAAATTTATTTACAA
TTAGCGATGAGGATTTTACCTATTTAATCAAAAAAGCACGTGAATTAGCACTTGTTGAGCTAAAAAAATTAAATGCAATA
AGTTTTAAATTATTAATCAATAACGAAAAAGAGGCACAACAAACAATTTTTCATACTCACATCCATATTATCCCGTTTTA
TAAAAAAGATTAA

Upstream 100 bases:

>100_bases
GCAAAAAACTTTTTTGAAGGACTTGGTTATAAAATTGAATCAAAAGACGAGATTATCAAACTAGATTAGCGCTAAATTTT
ACTAAATTAGACAGGAAATT

Downstream 100 bases:

>100_bases
CTAGCTAATTATTACAATTTAAAAAAACCAAAAAAATTTGAATTTTTGTTTTTTTTATTCCTTTTTTAAATAAACTTTAT
TGATTTGATCAACTAAATTA

Product: HIT-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MENTTLFLDIIAKKLPAKIIYEDEKVIAFYDKFPVSPGHFLVVPKNYSRNLFTISDEDFTYLIKKARELALVELKKLNAI
SFKLLINNEKEAQQTIFHTHIHIIPFYKKD

Sequences:

>Translated_110_residues
MENTTLFLDIIAKKLPAKIIYEDEKVIAFYDKFPVSPGHFLVVPKNYSRNLFTISDEDFTYLIKKARELALVELKKLNAI
SFKLLINNEKEAQQTIFHTHIHIIPFYKKD
>Mature_110_residues
MENTTLFLDIIAKKLPAKIIYEDEKVIAFYDKFPVSPGHFLVVPKNYSRNLFTISDEDFTYLIKKARELALVELKKLNAI
SFKLLINNEKEAQQTIFHTHIHIIPFYKKD

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=106, Percent_Identity=33.0188679245283, Blast_Score=74, Evalue=2e-14,
Organism=Homo sapiens, GI14211923, Length=103, Percent_Identity=34.9514563106796, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17506713, Length=103, Percent_Identity=41.747572815534, Blast_Score=79, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24581222, Length=107, Percent_Identity=34.5794392523364, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI28574010, Length=107, Percent_Identity=34.5794392523364, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 12929; Mature: 12929

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENTTLFLDIIAKKLPAKIIYEDEKVIAFYDKFPVSPGHFLVVPKNYSRNLFTISDEDFT
CCCCEEEHEEHHHHCCEEEEEECCEEEEEEECCCCCCCCEEEEECCCCCCEEEECCCCHH
YLIKKARELALVELKKLNAISFKLLINNEKEAQQTIFHTHIHIIPFYKKD
HHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHEEEEEEEEEEEEECC
>Mature Secondary Structure
MENTTLFLDIIAKKLPAKIIYEDEKVIAFYDKFPVSPGHFLVVPKNYSRNLFTISDEDFT
CCCCEEEHEEHHHHCCEEEEEECCEEEEEEECCCCCCCCEEEEECCCCCCEEEECCCCHH
YLIKKARELALVELKKLNAISFKLLINNEKEAQQTIFHTHIHIIPFYKKD
HHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3208756; 1472710 [H]