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The map label for this gene is 54020126

Identifier: 54020126

GI number: 54020126

Start: 325305

End: 327746

Strand: Direct

Name: 54020126

Synonym: mhp287

Alternate gene names: NA

Gene position: 325305-327746 (Clockwise)

Preceding gene: 54020125

Following gene: 54020127

Centisome position: 36.44

GC content: 29.69

Gene sequence:

>2442_bases
ATGCCCTTAATGGTGAATCCAACACGTTTTTTCGGCCTTGGTGGTATGCAGGAAATCGGTAAATCAACTTTAGTTATCGA
GGATGATTATGATATTGTAATTATTGATGCAGGAATCAAATTTGCCAACCTTTTTCATACAGGCATTAGAGGAATGGTAC
CAAATTATCAGTACCTGCAAGAAAAACAAGCTAAAATACGTGGTCTTTTTGTAACTCATGGTCATGAAGATCATATTGGC
GGAATAATTTTTTTAGTTCAAGAAGTAGATATTAAAAAGATTTTTGCCCCAAAAATCGCTATTCAATATTTAAAAGCAAA
ATTTGAGGACCAAAAAATTAGGCCAAAGATTGAATTTATCGAAATCAACAAAAACGATACTCATCGTTTTGAAAGTTTTA
CAGTCGATTTCTGAACCGCCCAGCATTCTATCCCGGATGCTTTTGGAATTAGAATAACCTCTAGACATGGTTCGATTATG
TGCACAGGCGACTTTCGTTTTGATTATACCCCAATTGGAAATTATACCGATTTTGAAAGACTAAAAGAAATTGGGAACCA
AAAATTAACAGTGCTTTTTTCTGATTCAACAAATGCAATGAGGCCAAACCATTCACCTTCAGAACGGGATATTCTGGGTG
ATATTGAAATGCATATGCGATCTGCTACAAGAAAAATTATCATCACCGCTTTTGCTTCAAATTTAACAAGAATTAAAGCA
CTAATTGAAATTGGGATAAAATTAGAAAAAAAAATCCTTGTTTTCGGGCGCTCGATGGTAAACGGAATTAATATTGGTCG
TCGTTCAGGATATATAAATGTTGATGATAATGTTTTTCTTGGCAAAAATTTAGAAGGTGTTGAGGAAAATCAGATGTTAA
TTTTAACAACAGGGTCCCAGGGCGAACAACTTGCGGCTTTGGATCGAATGTCAAACAGAAAACATCCAAAAATCAGCATC
GAACCCCGGGATCTAATTATTTTTTCCTCTTCGCCAATTCCTGGAAATAAAATTAAAATTGAACATTTGATCAATAGATT
ATATAAATTAAGCGCAATTATTAAGGAAAATGGACCAGATGGTTATCTTCATACCTCCGGTCATGCTTATAAAGCCGAAC
ATGAAAAAATTTTTCAACTAACAAAACCAAAGTACTTTTTCCCTTATCATGGTGAATATCGAATGTGCCTCGCCCACTCG
CGGACCGCAATTGAATCCGGAGTTGATCCAAAAAATGTAATTATCCCTGAAAACGGTCAAGTTTTTAAAATGTACAATCA
AGAAATTTATAAAACAAATGAAAAAATTCCTTGTGATCCGGTTTATATTGACGGTGAGACTATCTCTCGGGATAACTCCC
GGATTATTAATGAGCGACAAGAAATGCGGGAAAATGGTTTTGTTTTTGTCTTAGTTCCATTTGATAGACAAAAAAATTCA
ATAAATGGGCGAATTTCGGTTATTACAAAAGGAGCTTTTTCAACTAAAAATGGAACACAAATTATTGCTGAAATTCGCCG
ACTTTGTTTTGCATCAATTAAGTTTTTTATTGAAAAACAGCCAAAATGATCACCACCGCAAATTAAACAATTAATAAAAA
ATCGGCTAAATTCGTATTTCCATAGAACAAAACGTTGAAAACCAGTAATTTTAACACAAATTCTTTATGTTGATCAAAAA
GAAGATTTTCTAAAAAATTACCAAGAAAAAACCACGGAAAAATTTGTGGTTAAAAAAATTAAAACTAATCTTACCAAAGA
AAGTGAAAAAAATAAAGAAATTCCAACTAAAAAAGGCAAAAAAATGGAAAACCATCCAAAAACTGAACAAAATTATAATA
AAATAGCTAAAAAATCAGATTTAAATAAAAAAGTACAAAATTTACAAATTAGGCAAAAAAATGTGAATGTCAAATCTTCT
AAGGCAGAAAAAGATCAAGAAAATAAAATAAAAGAATCAATTAAAAAAGTGACTAGAAAAATAAATTCCACTTTGACAAA
AACAAAAAATGATAATCAAAGTGATATTCTAATAGAAAAATCACCAAATTTTAATCAGAAAAACCCAAATAAATTTAAAA
ATAAAAGTCCTCAAAAAACCGAAAACTTAGTATTCTTTAAAAAAGAAAATTTAAAAAAAAGCTATGAAAATGATGCTAAA
AAAAAAGATAAAAAAAGTCTTATAAACTCAAAAAATTTACCTTATAATAATAATAATAATAATAAAGAAAATGTTAAAAA
TTCAGGAGATCCACAAGCCTTATTAGCCAGAAAAAAACTTTATCCTTTAAAAAATAAGAAACAAAATACCCTTTTTCAAA
CGAAAAAACAAGAACTGAATATACCAAAAAGCCCAAAAAAATTTAAAAAATCTAATTTTATTACTGCTATAAATACTAAA
ATTAATAAAGAAAATAATAAAAAAAACTCACAAAAAAAGTAA

Upstream 100 bases:

>100_bases
TATCATTTTTTGAAATGATAGTTATTATTGCTGATGTTTATTTATAAATTTATAAATTATTATAAAAAAATTAAAAAAAG
ATAATATTGTTAGGAAAATT

Downstream 100 bases:

>100_bases
TAAAATACCGAAAAATGCTTAAAAATAAAGATACTCACAATTTTATCTACATTAAAGGCGCACGCGAAAACAATTTAAAA
AATATTAATCTTGTTCTTCC

Product: serine protease

Products: NA

Alternate protein names: RNase J1 [H]

Number of amino acids: Translated: 813; Mature: 812

Protein sequence:

>813_residues
MPLMVNPTRFFGLGGMQEIGKSTLVIEDDYDIVIIDAGIKFANLFHTGIRGMVPNYQYLQEKQAKIRGLFVTHGHEDHIG
GIIFLVQEVDIKKIFAPKIAIQYLKAKFEDQKIRPKIEFIEINKNDTHRFESFTVDFWTAQHSIPDAFGIRITSRHGSIM
CTGDFRFDYTPIGNYTDFERLKEIGNQKLTVLFSDSTNAMRPNHSPSERDILGDIEMHMRSATRKIIITAFASNLTRIKA
LIEIGIKLEKKILVFGRSMVNGINIGRRSGYINVDDNVFLGKNLEGVEENQMLILTTGSQGEQLAALDRMSNRKHPKISI
EPRDLIIFSSSPIPGNKIKIEHLINRLYKLSAIIKENGPDGYLHTSGHAYKAEHEKIFQLTKPKYFFPYHGEYRMCLAHS
RTAIESGVDPKNVIIPENGQVFKMYNQEIYKTNEKIPCDPVYIDGETISRDNSRIINERQEMRENGFVFVLVPFDRQKNS
INGRISVITKGAFSTKNGTQIIAEIRRLCFASIKFFIEKQPKWSPPQIKQLIKNRLNSYFHRTKRWKPVILTQILYVDQK
EDFLKNYQEKTTEKFVVKKIKTNLTKESEKNKEIPTKKGKKMENHPKTEQNYNKIAKKSDLNKKVQNLQIRQKNVNVKSS
KAEKDQENKIKESIKKVTRKINSTLTKTKNDNQSDILIEKSPNFNQKNPNKFKNKSPQKTENLVFFKKENLKKSYENDAK
KKDKKSLINSKNLPYNNNNNNKENVKNSGDPQALLARKKLYPLKNKKQNTLFQTKKQELNIPKSPKKFKKSNFITAINTK
INKENNKKNSQKK

Sequences:

>Translated_813_residues
MPLMVNPTRFFGLGGMQEIGKSTLVIEDDYDIVIIDAGIKFANLFHTGIRGMVPNYQYLQEKQAKIRGLFVTHGHEDHIG
GIIFLVQEVDIKKIFAPKIAIQYLKAKFEDQKIRPKIEFIEINKNDTHRFESFTVDF*TAQHSIPDAFGIRITSRHGSIM
CTGDFRFDYTPIGNYTDFERLKEIGNQKLTVLFSDSTNAMRPNHSPSERDILGDIEMHMRSATRKIIITAFASNLTRIKA
LIEIGIKLEKKILVFGRSMVNGINIGRRSGYINVDDNVFLGKNLEGVEENQMLILTTGSQGEQLAALDRMSNRKHPKISI
EPRDLIIFSSSPIPGNKIKIEHLINRLYKLSAIIKENGPDGYLHTSGHAYKAEHEKIFQLTKPKYFFPYHGEYRMCLAHS
RTAIESGVDPKNVIIPENGQVFKMYNQEIYKTNEKIPCDPVYIDGETISRDNSRIINERQEMRENGFVFVLVPFDRQKNS
INGRISVITKGAFSTKNGTQIIAEIRRLCFASIKFFIEKQPK*SPPQIKQLIKNRLNSYFHRTKR*KPVILTQILYVDQK
EDFLKNYQEKTTEKFVVKKIKTNLTKESEKNKEIPTKKGKKMENHPKTEQNYNKIAKKSDLNKKVQNLQIRQKNVNVKSS
KAEKDQENKIKESIKKVTRKINSTLTKTKNDNQSDILIEKSPNFNQKNPNKFKNKSPQKTENLVFFKKENLKKSYENDAK
KKDKKSLINSKNLPYNNNNNNKENVKNSGDPQALLARKKLYPLKNKKQNTLFQTKKQELNIPKSPKKFKKSNFITAINTK
INKENNKKNSQKK
>Mature_812_residues
PLMVNPTRFFGLGGMQEIGKSTLVIEDDYDIVIIDAGIKFANLFHTGIRGMVPNYQYLQEKQAKIRGLFVTHGHEDHIGG
IIFLVQEVDIKKIFAPKIAIQYLKAKFEDQKIRPKIEFIEINKNDTHRFESFTVDF*TAQHSIPDAFGIRITSRHGSIMC
TGDFRFDYTPIGNYTDFERLKEIGNQKLTVLFSDSTNAMRPNHSPSERDILGDIEMHMRSATRKIIITAFASNLTRIKAL
IEIGIKLEKKILVFGRSMVNGINIGRRSGYINVDDNVFLGKNLEGVEENQMLILTTGSQGEQLAALDRMSNRKHPKISIE
PRDLIIFSSSPIPGNKIKIEHLINRLYKLSAIIKENGPDGYLHTSGHAYKAEHEKIFQLTKPKYFFPYHGEYRMCLAHSR
TAIESGVDPKNVIIPENGQVFKMYNQEIYKTNEKIPCDPVYIDGETISRDNSRIINERQEMRENGFVFVLVPFDRQKNSI
NGRISVITKGAFSTKNGTQIIAEIRRLCFASIKFFIEKQPK*SPPQIKQLIKNRLNSYFHRTKR*KPVILTQILYVDQKE
DFLKNYQEKTTEKFVVKKIKTNLTKESEKNKEIPTKKGKKMENHPKTEQNYNKIAKKSDLNKKVQNLQIRQKNVNVKSSK
AEKDQENKIKESIKKVTRKINSTLTKTKNDNQSDILIEKSPNFNQKNPNKFKNKSPQKTENLVFFKKENLKKSYENDAKK
KDKKSLINSKNLPYNNNNNNKENVKNSGDPQALLARKKLYPLKNKKQNTLFQTKKQELNIPKSPKKFKKSNFITAINTKI
NKENNKKNSQKK

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 93441; Mature: 93310

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLMVNPTRFFGLGGMQEIGKSTLVIEDDYDIVIIDAGIKFANLFHTGIRGMVPNYQYLQ
CCEEECCHHHHCCCCHHHHCCCEEEEECCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHH
EKQAKIRGLFVTHGHEDHIGGIIFLVQEVDIKKIFAPKIAIQYLKAKFEDQKIRPKIEFI
HHHHHHEEEEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
EINKNDTHRFESFTVDFTAQHSIPDAFGIRITSRHGSIMCTGDFRFDYTPIGNYTDFERL
EECCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCEEEEECCEEEEECCCCCCHHHHH
KEIGNQKLTVLFSDSTNAMRPNHSPSERDILGDIEMHMRSATRKIIITAFASNLTRIKAL
HHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHH
IEIGIKLEKKILVFGRSMVNGINIGRRSGYINVDDNVFLGKNLEGVEENQMLILTTGSQG
HHHCCHHEEEHEEHHHHHHHCCCCCCCCCEEECCCCEEECCCCCCCCCCCEEEEEECCCC
EQLAALDRMSNRKHPKISIEPRDLIIFSSSPIPGNKIKIEHLINRLYKLSAIIKENGPDG
CHHHHHHHHCCCCCCEEEECCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCC
YLHTSGHAYKAEHEKIFQLTKPKYFFPYHGEYRMCLAHSRTAIESGVDPKNVIIPENGQV
EEECCCCCCCCHHHHHHHHCCCCEECCCCCCEEEEEHHCHHHHHCCCCCCEEEECCCCCE
FKMYNQEIYKTNEKIPCDPVYIDGETISRDNSRIINERQEMRENGFVFVLVPFDRQKNSI
EEEECHHHHHCCCCCCCCCEEECCCEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCC
NGRISVITKGAFSTKNGTQIIAEIRRLCFASIKFFIEKQPKSPPQIKQLIKNRLNSYFHR
CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
TKRKPVILTQILYVDQKEDFLKNYQEKTTEKFVVKKIKTNLTKESEKNKEIPTKKGKKME
HCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
NHPKTEQNYNKIAKKSDLNKKVQNLQIRQKNVNVKSSKAEKDQENKIKESIKKVTRKINS
CCCCCHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TLTKTKNDNQSDILIEKSPNFNQKNPNKFKNKSPQKTENLVFFKKENLKKSYENDAKKKD
HHHCCCCCCCCCEEEECCCCCCCCCCCHHCCCCCCCHHCEEEEEHHHHHHHHHHHHHHHH
KKSLINSKNLPYNNNNNNKENVKNSGDPQALLARKKLYPLKNKKQNTLFQTKKQELNIPK
HHHHHCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
SPKKFKKSNFITAINTKINKENNKKNSQKK
CHHHHHHCCCEEEEECEECCCCCCCCCCCC
>Mature Secondary Structure 
PLMVNPTRFFGLGGMQEIGKSTLVIEDDYDIVIIDAGIKFANLFHTGIRGMVPNYQYLQ
CEEECCHHHHCCCCHHHHCCCEEEEECCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHH
EKQAKIRGLFVTHGHEDHIGGIIFLVQEVDIKKIFAPKIAIQYLKAKFEDQKIRPKIEFI
HHHHHHEEEEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
EINKNDTHRFESFTVDFTAQHSIPDAFGIRITSRHGSIMCTGDFRFDYTPIGNYTDFERL
EECCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCEEEEECCEEEEECCCCCCHHHHH
KEIGNQKLTVLFSDSTNAMRPNHSPSERDILGDIEMHMRSATRKIIITAFASNLTRIKAL
HHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHH
IEIGIKLEKKILVFGRSMVNGINIGRRSGYINVDDNVFLGKNLEGVEENQMLILTTGSQG
HHHCCHHEEEHEEHHHHHHHCCCCCCCCCEEECCCCEEECCCCCCCCCCCEEEEEECCCC
EQLAALDRMSNRKHPKISIEPRDLIIFSSSPIPGNKIKIEHLINRLYKLSAIIKENGPDG
CHHHHHHHHCCCCCCEEEECCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCC
YLHTSGHAYKAEHEKIFQLTKPKYFFPYHGEYRMCLAHSRTAIESGVDPKNVIIPENGQV
EEECCCCCCCCHHHHHHHHCCCCEECCCCCCEEEEEHHCHHHHHCCCCCCEEEECCCCCE
FKMYNQEIYKTNEKIPCDPVYIDGETISRDNSRIINERQEMRENGFVFVLVPFDRQKNSI
EEEECHHHHHCCCCCCCCCEEECCCEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCC
NGRISVITKGAFSTKNGTQIIAEIRRLCFASIKFFIEKQPKSPPQIKQLIKNRLNSYFHR
CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
TKRKPVILTQILYVDQKEDFLKNYQEKTTEKFVVKKIKTNLTKESEKNKEIPTKKGKKME
HCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
NHPKTEQNYNKIAKKSDLNKKVQNLQIRQKNVNVKSSKAEKDQENKIKESIKKVTRKINS
CCCCCHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TLTKTKNDNQSDILIEKSPNFNQKNPNKFKNKSPQKTENLVFFKKENLKKSYENDAKKKD
HHHCCCCCCCCCEEEECCCCCCCCCCCHHCCCCCCCHHCEEEEEHHHHHHHHHHHHHHHH
KKSLINSKNLPYNNNNNNKENVKNSGDPQALLARKKLYPLKNKKQNTLFQTKKQELNIPK
HHHHHCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
SPKKFKKSNFITAINTKINKENNKKNSQKK
CHHHHHHCCCEEEEECEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA