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The map label for this gene is ybeY [C]

Identifier: 54020099

GI number: 54020099

Start: 252463

End: 252915

Strand: Direct

Name: ybeY [C]

Synonym: mhp224

Alternate gene names: 54020099

Gene position: 252463-252915 (Clockwise)

Preceding gene: 54020098

Following gene: 54020100

Centisome position: 28.28

GC content: 25.61

Gene sequence:

>453_bases
ATGAAGGCAAAAATTAATTTCCTTAATCAAAGCAGAATTAAGTTTAAATATTTAAAGTTGTTTAGGAAAATTTTTAAACT
TTTAGTCGAAAAAGAGCAAATAACAGGTGAAATTAGTCTAGATTTAATGTTAATAACTCAAAGAAAAGCTCAAAAATTAG
CCATTAAATTCAAAAATATCAATTATATCCCTGATGTTTTATCTTTTCCAAGTAATTTAATAATTGCTAAAAAAAATTTT
CGCCTTCATTTTCTAGGAGAAATTTTTATGACCCCAGCAAAAATTATAAAACAAGCAAATGAATATGGCCACTCAGAAGA
GCGTGAGTTTTCTTATCTTTTTGTTCATAGCATCTATCATTTGCTTGGCTTTGATCACCAGGATGAAAAAACAAATAAGT
TAATGGATGAAAAAGTTGAAAATATTTTAATAAATTTAGGAATTAATCGATAA

Upstream 100 bases:

>100_bases
TCTTACTTAAACCGAAAACACAAATACCGGCAGTACTCTTTCTTAAGGATAATGGAAATTTTTTTGATCTTTTTATAAAA
TAATTGTAAAATTATAATAA

Downstream 100 bases:

>100_bases
TGAAAAAAATTTTTTTAGAACTAGAAAAATTAAGTAAAAAAGCCTACTGTCCTTATTCAGATTTTGCCGTTGCTGCAATT
TTAGTGACTACTTCTGGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MKAKINFLNQSRIKFKYLKLFRKIFKLLVEKEQITGEISLDLMLITQRKAQKLAIKFKNINYIPDVLSFPSNLIIAKKNF
RLHFLGEIFMTPAKIIKQANEYGHSEEREFSYLFVHSIYHLLGFDHQDEKTNKLMDEKVENILINLGINR

Sequences:

>Translated_150_residues
MKAKINFLNQSRIKFKYLKLFRKIFKLLVEKEQITGEISLDLMLITQRKAQKLAIKFKNINYIPDVLSFPSNLIIAKKNF
RLHFLGEIFMTPAKIIKQANEYGHSEEREFSYLFVHSIYHLLGFDHQDEKTNKLMDEKVENILINLGINR
>Mature_150_residues
MKAKINFLNQSRIKFKYLKLFRKIFKLLVEKEQITGEISLDLMLITQRKAQKLAIKFKNINYIPDVLSFPSNLIIAKKNF
RLHFLGEIFMTPAKIIKQANEYGHSEEREFSYLFVHSIYHLLGFDHQDEKTNKLMDEKVENILINLGINR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_MYCH2 (Q601H8)

Other databases:

- EMBL:   AE017332
- RefSeq:   YP_115737.1
- ProteinModelPortal:   Q601H8
- STRING:   Q601H8
- GeneID:   3105726
- GenomeReviews:   AE017332_GR
- KEGG:   mhy:mhp224
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   NISIKYL
- ProtClustDB:   CLSK741393
- BioCyc:   MHYO295358:MHP224-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17803; Mature: 17803

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKINFLNQSRIKFKYLKLFRKIFKLLVEKEQITGEISLDLMLITQRKAQKLAIKFKNI
CCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEHHHHHHHEEEECCC
NYIPDVLSFPSNLIIAKKNFRLHFLGEIFMTPAKIIKQANEYGHSEEREFSYLFVHSIYH
CCCCHHHCCCCCEEEEECCCEEEEHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LLGFDHQDEKTNKLMDEKVENILINLGINR
HHCCCCCCHHHHHHHHHHHHHEEHCCCCCC
>Mature Secondary Structure
MKAKINFLNQSRIKFKYLKLFRKIFKLLVEKEQITGEISLDLMLITQRKAQKLAIKFKNI
CCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEHHHHHHHEEEECCC
NYIPDVLSFPSNLIIAKKNFRLHFLGEIFMTPAKIIKQANEYGHSEEREFSYLFVHSIYH
CCCCHHHCCCCCEEEEECCCEEEEHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LLGFDHQDEKTNKLMDEKVENILINLGINR
HHCCCCCCHHHHHHHHHHHHHEEHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA