Click here to switch to the map view.

The map label for this gene is 53722641

Identifier: 53722641

GI number: 53722641

Start: 2192393

End: 2193679

Strand: Reverse

Name: 53722641

Synonym: BPSS1618

Alternate gene names: NA

Gene position: 2193679-2192393 (Counterclockwise)

Preceding gene: 53722642

Following gene: 53722640

Centisome position: 69.14

GC content: 76.53

Gene sequence:

>1287_bases
ATGAACACCGAGCCGATCGAACTGGAACCCGCTACCGCCGAGCCGCCCGGCATCGACACCGCGCTGCCGCTGCCCGGGTG
CAGCGCGTTCGACGCGGCGCTCGCGCGCATCGTCTGCGACGCGCGGCTCGCCGCCTGGCTCGCGCGCTTTCCGGGGCTGT
CCGACTGGCGCGCGTCGGCGGGCGAGCGGCCGTGCTTCGAGCGCCCCGGCGTGCTCGAGCTGCGGCGCGGCGGCGCGGCC
GCGCACGTCGCGATCGATCTCGCGGCGTTTCCGGCGCTCGAGGTCGTCGCCGCGCCCGCGCTCGACGCGCGCGGCGACGC
GAGCCTCTCGCTGCGCGCGGCGCTCGCGGCGACGCTGCTCGCGCCGCTCGTCGCCGCGTTCGCGGCGGCGGGGCTCGACG
GCGTGACGGTCGGCGCGCTGCGCGCGGTGCCCGCCGCGGCGCTCGACGCGACGCGCTGCATGTTGTCGTTCGCGCTCGAC
GGCGCGCCGCTGCGCTGCGCGCTGCTCGATGCGCAAGCGCCGTGGCTCGACGCGCTCGCGGCCCGGCTGCGCGACGAGCG
GCGCCGCGATGCGGCAAGCGGGCTCGCCCGCGTGCGCTTGCCGGGGCGCGTGCGGCTCGGCACGCGCGCGCTGCCGCTCG
CGGTGCTGCGCAGCCTGCGGCCGGGCGACGTGCTGCTCGACATGGTGCCCGCCGCACTGGGCGCCGCGCGGGCGGGCCCG
CTGCATGCGTGGTGGGGCGCGCGGCGCGCGGCCCAATGGCACGCAACCGTTCTGATCGAGGGAACCACGATGACGATGAC
CGAAATGCCAGACACCGCCGACGACCTCGACGAGCCGATCGTCGCGGGCGACTTGCCGGCCGATTCCTTGGCCGATTTTC
CGGCCGATTCCCCGGCTGCAGTTCCGGCTGAATTTCCGGCCGACCGGGCGGGCGATCTGCCGGCCGATTCCGCGGCTCAT
TCGTCGCCCGGTTCGCTCGCCGGGTTGCAGGCCGGGTTGCCGGCCGACGCGCCGCCGCGCGACGCGCGGTACGCCGCGCC
CGAGCCGGCCGATCTCGGCGAGGTCGCGCTGCCCGTGCACGTCGAGATCGACACGCTGTCGCTGTCGATCGCCGAGCTCG
CCGCGCTGCGTCCGGGCTACGTGCTCGAGTTGCCGCTCGCCGCGCGCGACGTGCCGGTGCGGCTCGTCGCATACGGCCAG
GCGATCGGCGGCGGCCGCCTCGTCGCGGTGGGCGCGCATCTCGGCGTGCGGATCGACCGGATGGCGGGCGACGATGGTTC
AGTTTAA

Upstream 100 bases:

>100_bases
TGCACGCGCGACTCGACACGCTGCTCGCGCATCACGGCGCGCCGCGCACGATCGAGATCGACGTCGGCTGAAACGCGCGC
AATCGAACCCGACCGCGACG

Downstream 100 bases:

>100_bases
CGACATCACCGGCCTCTTGATCGCCGTGCTCGTGATGAGCATGGTGCCGTTCATCGCGATGGTGGTCACCTCGTACGCGA
AGATCGTCGTCGTGCTCGGC

Product: type III secretion protein

Products: NA

Alternate protein names: HrcQ Protein; Surface Presentation Of Antigens Domain-Containing Protein; Flagellar Motor Switch/Type III Secretory Pathway Protein; Type III Secretion System Apparatus Protein Hrcq; Type III Secretion Apparatus Protein SctQ; Type III Secretion Inner Membrane Protein SctQ; Hrp Conserved Protein HRCQ

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MNTEPIELEPATAEPPGIDTALPLPGCSAFDAALARIVCDARLAAWLARFPGLSDWRASAGERPCFERPGVLELRRGGAA
AHVAIDLAAFPALEVVAAPALDARGDASLSLRAALAATLLAPLVAAFAAAGLDGVTVGALRAVPAAALDATRCMLSFALD
GAPLRCALLDAQAPWLDALAARLRDERRRDAASGLARVRLPGRVRLGTRALPLAVLRSLRPGDVLLDMVPAALGAARAGP
LHAWWGARRAAQWHATVLIEGTTMTMTEMPDTADDLDEPIVAGDLPADSLADFPADSPAAVPAEFPADRAGDLPADSAAH
SSPGSLAGLQAGLPADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQ
AIGGGRLVAVGAHLGVRIDRMAGDDGSV

Sequences:

>Translated_428_residues
MNTEPIELEPATAEPPGIDTALPLPGCSAFDAALARIVCDARLAAWLARFPGLSDWRASAGERPCFERPGVLELRRGGAA
AHVAIDLAAFPALEVVAAPALDARGDASLSLRAALAATLLAPLVAAFAAAGLDGVTVGALRAVPAAALDATRCMLSFALD
GAPLRCALLDAQAPWLDALAARLRDERRRDAASGLARVRLPGRVRLGTRALPLAVLRSLRPGDVLLDMVPAALGAARAGP
LHAWWGARRAAQWHATVLIEGTTMTMTEMPDTADDLDEPIVAGDLPADSLADFPADSPAAVPAEFPADRAGDLPADSAAH
SSPGSLAGLQAGLPADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQ
AIGGGRLVAVGAHLGVRIDRMAGDDGSV
>Mature_428_residues
MNTEPIELEPATAEPPGIDTALPLPGCSAFDAALARIVCDARLAAWLARFPGLSDWRASAGERPCFERPGVLELRRGGAA
AHVAIDLAAFPALEVVAAPALDARGDASLSLRAALAATLLAPLVAAFAAAGLDGVTVGALRAVPAAALDATRCMLSFALD
GAPLRCALLDAQAPWLDALAARLRDERRRDAASGLARVRLPGRVRLGTRALPLAVLRSLRPGDVLLDMVPAALGAARAGP
LHAWWGARRAAQWHATVLIEGTTMTMTEMPDTADDLDEPIVAGDLPADSLADFPADSPAAVPAEFPADRAGDLPADSAAH
SSPGSLAGLQAGLPADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQ
AIGGGRLVAVGAHLGVRIDRMAGDDGSV

Specific function: Unknown

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43921; Mature: 43921

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEPIELEPATAEPPGIDTALPLPGCSAFDAALARIVCDARLAAWLARFPGLSDWRASA
CCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCC
GERPCFERPGVLELRRGGAAAHVAIDLAAFPALEVVAAPALDARGDASLSLRAALAATLL
CCCCCCCCCCCEEEECCCCEEEEEEEHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
APLVAAFAAAGLDGVTVGALRAVPAAALDATRCMLSFALDGAPLRCALLDAQAPWLDALA
HHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH
ARLRDERRRDAASGLARVRLPGRVRLGTRALPLAVLRSLRPGDVLLDMVPAALGAARAGP
HHHHHHHHHHHHCCEEEEECCCCEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
LHAWWGARRAAQWHATVLIEGTTMTMTEMPDTADDLDEPIVAGDLPADSLADFPADSPAA
CHHHHHHHHCCCEEEEEEEECCEEEEECCCCCHHHHCCCCEECCCCHHHHHCCCCCCCCC
VPAEFPADRAGDLPADSAAHSSPGSLAGLQAGLPADAPPRDARYAAPEPADLGEVALPVH
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
VEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDR
EEEEEHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCCEEEEEECCCCEEEEE
MAGDDGSV
ECCCCCCC
>Mature Secondary Structure
MNTEPIELEPATAEPPGIDTALPLPGCSAFDAALARIVCDARLAAWLARFPGLSDWRASA
CCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCC
GERPCFERPGVLELRRGGAAAHVAIDLAAFPALEVVAAPALDARGDASLSLRAALAATLL
CCCCCCCCCCCEEEECCCCEEEEEEEHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
APLVAAFAAAGLDGVTVGALRAVPAAALDATRCMLSFALDGAPLRCALLDAQAPWLDALA
HHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH
ARLRDERRRDAASGLARVRLPGRVRLGTRALPLAVLRSLRPGDVLLDMVPAALGAARAGP
HHHHHHHHHHHHCCEEEEECCCCEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
LHAWWGARRAAQWHATVLIEGTTMTMTEMPDTADDLDEPIVAGDLPADSLADFPADSPAA
CHHHHHHHHCCCEEEEEEEECCEEEEECCCCCHHHHCCCCEECCCCHHHHHCCCCCCCCC
VPAEFPADRAGDLPADSAAHSSPGSLAGLQAGLPADAPPRDARYAAPEPADLGEVALPVH
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
VEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDR
EEEEEHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCCEEEEEECCCCEEEEE
MAGDDGSV
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA