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The map label for this gene is int

Identifier: 52841304

GI number: 52841304

Start: 1165936

End: 1167117

Strand: Reverse

Name: int

Synonym: lpg1070

Alternate gene names: 52841304

Gene position: 1167117-1165936 (Counterclockwise)

Preceding gene: 52841305

Following gene: 52841303

Centisome position: 34.35

GC content: 36.8

Gene sequence:

>1182_bases
ATGAAATTTATCGATAGCTATATTAAAAATCTCGCGCCAGAGACCACCTGGTTTGAAAAAATAGAATCTTCTGGATTAGG
TATTAGAGTAATGCCAAGTGGTAATAAATCTTGGTTTTACCGTTTTAGTATGAATGGTAAACGTCAAAAAATGACCTTAG
GAAAATATCCAGCTATTAGTCTAAAACAGGCTCGTGAATATCTTGCTAAAGCGCAAAGTTTAAAAGAGCAAGGTATAAAT
CCTATAGAAAATACCAAGCTAGAAAAATTAAAAGAAGACAATACCTTTTCAAAATTAATACAGTCTTGGTACGAAAATTA
TGCCGTTAAAAATAGAAAGCAACCACGCCCTATCAAATATCAGATTGACTCAGAAATAATTCCTCTACTAGGCGATACTG
TACTTGATAAGTTACAAACCAAAGATATTACAATCGCCCTTGACAAAATAGTACAACGAGGAGCGCCAATTCATGCGAAT
CGCATTCTCAGCACTATTAAACAAGTTCTAAACTATGCAGTGAGTCGTGGTTATATTCAATATAATCCAGCTACCAATAT
ACGATCACGTGATATCGGTGGTATTGAAAAGCCCAGGGAGCGGGTACTATCGCCCGAAGAAATAAGAATAATATGGAAAT
TCCTTGAAAGCGATAAAAGCCAAATGTCTGAATCAGCCAGGTTAGCAATTAAAGTTATTATACTTACTGGTGTTAGAACA
GGTGAAATCCGACTGGCACAATGGCATCAATTTGATTTTGAGCAATCTTTATGGACTATTCCTCCCGAGCATTCAAAAGG
AGGAATAACTGTAAAAATACACTTGAGTGAACTTACAAAAAAATTACTACTTCAGTTTAAAGAACAATCTGTCTCCCCTT
TTGTAATTCCAGGCATAACAATCGATGTTCCTATGTCCAAAGATGCCCTTCCACGCGCAATTAAAAGAATTCAGAATCGG
GTGGGAATTCCTGAATGGACTGCCCATGACTTAAGAAGAACCTTTGCGACACAATTGGGTGAGTCACTAAATATTGATCC
CGTGGTGATAGAAAAATGTCTTGGCCACAAAATGCCTCGTATTATGGCTACTTATAATAAAAATGAGATGCTACCCCAAC
GCAAAGAGGCATTGGATTCCTGGGCAAACCATATTGCAAGATTAATCTCATCAAAGGATTGA

Upstream 100 bases:

>100_bases
AATAATTGAGTTTTAGCAATTCAATTAGTATCATTTGATAATATACCTATACATAAATTTTGGTACCAAAAATGGTACCA
AAATAAAAAGGACTGTGTAG

Downstream 100 bases:

>100_bases
AAAAATCATATGAACTGCTCTATAATTAACTTAACACAACCGCCACGCCTAGAGGATGTTAGTCCTTGCGTAACCTTGGC
GGTTTTTTTTATGCGTATTG

Product: integrase, phage related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MKFIDSYIKNLAPETTWFEKIESSGLGIRVMPSGNKSWFYRFSMNGKRQKMTLGKYPAISLKQAREYLAKAQSLKEQGIN
PIENTKLEKLKEDNTFSKLIQSWYENYAVKNRKQPRPIKYQIDSEIIPLLGDTVLDKLQTKDITIALDKIVQRGAPIHAN
RILSTIKQVLNYAVSRGYIQYNPATNIRSRDIGGIEKPRERVLSPEEIRIIWKFLESDKSQMSESARLAIKVIILTGVRT
GEIRLAQWHQFDFEQSLWTIPPEHSKGGITVKIHLSELTKKLLLQFKEQSVSPFVIPGITIDVPMSKDALPRAIKRIQNR
VGIPEWTAHDLRRTFATQLGESLNIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALDSWANHIARLISSKD

Sequences:

>Translated_393_residues
MKFIDSYIKNLAPETTWFEKIESSGLGIRVMPSGNKSWFYRFSMNGKRQKMTLGKYPAISLKQAREYLAKAQSLKEQGIN
PIENTKLEKLKEDNTFSKLIQSWYENYAVKNRKQPRPIKYQIDSEIIPLLGDTVLDKLQTKDITIALDKIVQRGAPIHAN
RILSTIKQVLNYAVSRGYIQYNPATNIRSRDIGGIEKPRERVLSPEEIRIIWKFLESDKSQMSESARLAIKVIILTGVRT
GEIRLAQWHQFDFEQSLWTIPPEHSKGGITVKIHLSELTKKLLLQFKEQSVSPFVIPGITIDVPMSKDALPRAIKRIQNR
VGIPEWTAHDLRRTFATQLGESLNIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALDSWANHIARLISSKD
>Mature_393_residues
MKFIDSYIKNLAPETTWFEKIESSGLGIRVMPSGNKSWFYRFSMNGKRQKMTLGKYPAISLKQAREYLAKAQSLKEQGIN
PIENTKLEKLKEDNTFSKLIQSWYENYAVKNRKQPRPIKYQIDSEIIPLLGDTVLDKLQTKDITIALDKIVQRGAPIHAN
RILSTIKQVLNYAVSRGYIQYNPATNIRSRDIGGIEKPRERVLSPEEIRIIWKFLESDKSQMSESARLAIKVIILTGVRT
GEIRLAQWHQFDFEQSLWTIPPEHSKGGITVKIHLSELTKKLLLQFKEQSVSPFVIPGITIDVPMSKDALPRAIKRIQNR
VGIPEWTAHDLRRTFATQLGESLNIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALDSWANHIARLISSKD

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=383, Percent_Identity=28.7206266318538, Blast_Score=151, Evalue=9e-38,
Organism=Escherichia coli, GI1788690, Length=389, Percent_Identity=26.7352185089974, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI1788974, Length=404, Percent_Identity=26.4851485148515, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45161; Mature: 45161

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFIDSYIKNLAPETTWFEKIESSGLGIRVMPSGNKSWFYRFSMNGKRQKMTLGKYPAIS
CCHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCHHCCCCCCCCCCH
LKQAREYLAKAQSLKEQGINPIENTKLEKLKEDNTFSKLIQSWYENYAVKNRKQPRPIKY
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEE
QIDSEIIPLLGDTVLDKLQTKDITIALDKIVQRGAPIHANRILSTIKQVLNYAVSRGYIQ
EECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEE
YNPATNIRSRDIGGIEKPRERVLSPEEIRIIWKFLESDKSQMSESARLAIKVIILTGVRT
ECCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCC
GEIRLAQWHQFDFEQSLWTIPPEHSKGGITVKIHLSELTKKLLLQFKEQSVSPFVIPGIT
CCEEEEHHHHCCHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEECCEE
IDVPMSKDALPRAIKRIQNRVGIPEWTAHDLRRTFATQLGESLNIDPVVIEKCLGHKMPR
EECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCH
IMATYNKNEMLPQRKEALDSWANHIARLISSKD
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKFIDSYIKNLAPETTWFEKIESSGLGIRVMPSGNKSWFYRFSMNGKRQKMTLGKYPAIS
CCHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCHHCCCCCCCCCCH
LKQAREYLAKAQSLKEQGINPIENTKLEKLKEDNTFSKLIQSWYENYAVKNRKQPRPIKY
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEE
QIDSEIIPLLGDTVLDKLQTKDITIALDKIVQRGAPIHANRILSTIKQVLNYAVSRGYIQ
EECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEE
YNPATNIRSRDIGGIEKPRERVLSPEEIRIIWKFLESDKSQMSESARLAIKVIILTGVRT
ECCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCC
GEIRLAQWHQFDFEQSLWTIPPEHSKGGITVKIHLSELTKKLLLQFKEQSVSPFVIPGIT
CCEEEEHHHHCCHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEECCEE
IDVPMSKDALPRAIKRIQNRVGIPEWTAHDLRRTFATQLGESLNIDPVVIEKCLGHKMPR
EECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCH
IMATYNKNEMLPQRKEALDSWANHIARLISSKD
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]