Click here to switch to the map view.

The map label for this gene is deoR [H]

Identifier: 52787907

GI number: 52787907

Start: 4065447

End: 4066385

Strand: Reverse

Name: deoR [H]

Synonym: BLi04230

Alternate gene names: 52787907

Gene position: 4066385-4065447 (Counterclockwise)

Preceding gene: 52787908

Following gene: 52787906

Centisome position: 96.3

GC content: 50.59

Gene sequence:

>939_bases
ATGGACAAGGAAAAACAGCAATTGAGCATTGAAGCAGCGAGGCTCTACTATCAGTCTGACTACAGCCAGCAGCAAATCGC
CGAACAGCTGCAGATTTCAAGACCGACGGTATCAAGGCTGCTGCAGTTCGCCAAGGAAAAGGGGTATGTCCAAATCCGCG
TTATGGACCCGTTTGAAGATATGGATGCGCTCGGTGCGATGCTTGAGGAAAAATACGGGCTTCTAGAAGCGCATGTTGTC
TTTTCGCCGACCGCGGATTATACGACCATCACGCATTATCTCAGCCGCTTCGGGGCCGAATATATGCACGGCGCAGTCAA
GGACGGCGACATTGTCGGCGTCAGCTGGGGGACGACGATGTACCAAATCGCCCAAAATATGCAGCCTAAACAGGTGAAGG
GCGCAGAGGTCGTTCAACTGAAAGGCGGAATCAGCCATTCCAGCGTCAACACTTATTCGTCTGAAACGATTCAGCTGTTT
GCCGAAGCTTTTCAAACGATGCCGAGGTATTTGCCGCTTCCGGTCGTGTTTGACAATCCGGAAGTCAAACAGATGGTGGA
ACAGGACAGGCACATCAAGCGGATCATAGAAATGGGAAAACAGGCAAACATTGCGTTATTTACAGTCGGCACGGTACGCG
ATGAAGCCTTGCTGTTCAGGCTGGGGTATTTTCATGAAGAGGAAAAAGCCCTCCTGAAAGAACGTGGAGTCGGCGATATT
TGTTCGCGCTTTTTTGATGCGGAAGGAAACATTTGCAGCGATGCTATCGATTCGCGGACGATCGGCATTGAATTGGCTGA
CTTGAGGGAAAAAGAACGGTCGATTCTCGTAGCGGGCGGCAGCCGGAAAAAAGCCGCTATTCATGGTGCGCTCAAAGGCA
AGTATGCCAATGTGCTGATTATTGATCAGCACACGGCGAAAGAACTGCTTGATGACTGA

Upstream 100 bases:

>100_bases
ATGAGTCTGCATACGGACCGTATTTTGCAATTCAGCTGGATGAGAAGGAGCATGAACCTATATAATATGGGTTAAAGCGT
TACTAAAGGGGAGGAACGTG

Downstream 100 bases:

>100_bases
AGTGTCCAGGAAGAACAGCCTGGATTTTACTTTATTTTCTATTGAACAAAATTTCATATGATAATTTACATTTGTTCAAA
AATCGGTTATGCTGAAACTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MDKEKQQLSIEAARLYYQSDYSQQQIAEQLQISRPTVSRLLQFAKEKGYVQIRVMDPFEDMDALGAMLEEKYGLLEAHVV
FSPTADYTTITHYLSRFGAEYMHGAVKDGDIVGVSWGTTMYQIAQNMQPKQVKGAEVVQLKGGISHSSVNTYSSETIQLF
AEAFQTMPRYLPLPVVFDNPEVKQMVEQDRHIKRIIEMGKQANIALFTVGTVRDEALLFRLGYFHEEEKALLKERGVGDI
CSRFFDAEGNICSDAIDSRTIGIELADLREKERSILVAGGSRKKAAIHGALKGKYANVLIIDQHTAKELLDD

Sequences:

>Translated_312_residues
MDKEKQQLSIEAARLYYQSDYSQQQIAEQLQISRPTVSRLLQFAKEKGYVQIRVMDPFEDMDALGAMLEEKYGLLEAHVV
FSPTADYTTITHYLSRFGAEYMHGAVKDGDIVGVSWGTTMYQIAQNMQPKQVKGAEVVQLKGGISHSSVNTYSSETIQLF
AEAFQTMPRYLPLPVVFDNPEVKQMVEQDRHIKRIIEMGKQANIALFTVGTVRDEALLFRLGYFHEEEKALLKERGVGDI
CSRFFDAEGNICSDAIDSRTIGIELADLREKERSILVAGGSRKKAAIHGALKGKYANVLIIDQHTAKELLDD
>Mature_312_residues
MDKEKQQLSIEAARLYYQSDYSQQQIAEQLQISRPTVSRLLQFAKEKGYVQIRVMDPFEDMDALGAMLEEKYGLLEAHVV
FSPTADYTTITHYLSRFGAEYMHGAVKDGDIVGVSWGTTMYQIAQNMQPKQVKGAEVVQLKGGISHSSVNTYSSETIQLF
AEAFQTMPRYLPLPVVFDNPEVKQMVEQDRHIKRIIEMGKQANIALFTVGTVRDEALLFRLGYFHEEEKALLKERGVGDI
CSRFFDAEGNICSDAIDSRTIGIELADLREKERSILVAGGSRKKAAIHGALKGKYANVLIIDQHTAKELLDD

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=312, Percent_Identity=33.0128205128205, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1787791, Length=318, Percent_Identity=26.4150943396226, Blast_Score=111, Evalue=8e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 35121; Mature: 35121

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKEKQQLSIEAARLYYQSDYSQQQIAEQLQISRPTVSRLLQFAKEKGYVQIRVMDPFED
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEECCHHH
MDALGAMLEEKYGLLEAHVVFSPTADYTTITHYLSRFGAEYMHGAVKDGDIVGVSWGTTM
HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCHHHHCCCCCCCCEEEEECCHHH
YQIAQNMQPKQVKGAEVVQLKGGISHSSVNTYSSETIQLFAEAFQTMPRYLPLPVVFDNP
HHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCEEECCH
EVKQMVEQDRHIKRIIEMGKQANIALFTVGTVRDEALLFRLGYFHEEEKALLKERGVGDI
HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHCCCHHH
CSRFFDAEGNICSDAIDSRTIGIELADLREKERSILVAGGSRKKAAIHGALKGKYANVLI
HHHHHCCCCCCHHHHHCCCEEEEEHHHHHHCCCEEEEECCCCCHHHHHHHHCCCEEEEEE
IDQHTAKELLDD
EECHHHHHHHCC
>Mature Secondary Structure
MDKEKQQLSIEAARLYYQSDYSQQQIAEQLQISRPTVSRLLQFAKEKGYVQIRVMDPFED
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEEECCHHH
MDALGAMLEEKYGLLEAHVVFSPTADYTTITHYLSRFGAEYMHGAVKDGDIVGVSWGTTM
HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCHHHHCCCCCCCCEEEEECCHHH
YQIAQNMQPKQVKGAEVVQLKGGISHSSVNTYSSETIQLFAEAFQTMPRYLPLPVVFDNP
HHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCEEECCH
EVKQMVEQDRHIKRIIEMGKQANIALFTVGTVRDEALLFRLGYFHEEEKALLKERGVGDI
HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHCCCHHH
CSRFFDAEGNICSDAIDSRTIGIELADLREKERSILVAGGSRKKAAIHGALKGKYANVLI
HHHHHCCCCCCHHHHHCCCEEEEEHHHHHHCCCEEEEECCCCCHHHHHHHHCCCEEEEEE
IDQHTAKELLDD
EECHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]