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The map label for this gene is ykoC [H]

Identifier: 52787879

GI number: 52787879

Start: 4033238

End: 4033972

Strand: Reverse

Name: ykoC [H]

Synonym: BLi04202

Alternate gene names: 52787879

Gene position: 4033972-4033238 (Counterclockwise)

Preceding gene: 52787880

Following gene: 52787878

Centisome position: 95.53

GC content: 48.03

Gene sequence:

>735_bases
ATGAAAAGCAATGGTTCACTTCTTTCGGCATTGAACCCGAGCGCCAAGCTCTTTTCCCACCTCCTGGTCATGTGCATTCT
CATGTTTGTTTCAAATCCGAAACCGACTTTTTTCATTTGGCTGTTTGCGGTTGTCATCGGGATTTTTTTCGGGGGATGGA
CTTTGTCTTATTTAAGTAAACGGCTGCTGCCTTATCTTATTTTTTTTATTCTCGTATTTTGGATGATGGCCGCTTTTGGG
AAAGGCGAGGAAACGATTTGGGAATGGGCCTGGTTCCGCGTTACCGAGGAAAGCGTCGGCAATGGGCTGACAATCGCGCT
GCGGATGCTCGGCTTTGTCACATACGGTCTCTTGTTTACGTCAACAACCGATTTGACGCAGTTTATTATGAGCCTGATTC
ATCAATGCAGATTGTCGCCTAAATGGGCTTATGGCTTGCTGGCCGGCTTCCGTTTTGTCCCGCTTTTTCAGTCGGAGCTT
TCGCAAATGAAGGCGGCGCACAAAATCAGGGGCTATAAGCAAAAAAACAGCTGGAAGGCGTTTATTCGCTATGCGCTGCC
GTTGTTTTCGCAAGGCATCCGCAAATCGGAAAGAATCGCCGTTGCCATGGAAGCGAGAGGGTTTACCGGTACAAAAGACC
GCACCTACTATCAAACAGCGGGGCTTTCCGGAAAAGACTTCGTATATTTTGCGGGTCTGGCATCAGTCGCAGCGGGGATT
TTGCTCACTTTTTAA

Upstream 100 bases:

>100_bases
CGTATCAATTGTTCTCTGACCAAGACCTGGTCCGCCGCTTTTCATTGATACCGCCGCTTCACTACCGGTTCATGCACGAA
AGAAAGGAGAGGGTTCCCGT

Downstream 100 bases:

>100_bases
GAAGGTTTTTTACAGGGCCGCCTTGCGGCTCTTTTTTTATAAACCCGGGTACAGGCGGGCATTCTGTAAAATGCAAACAT
TTCGGACGTTGACTGAAATA

Product: YkoC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MKSNGSLLSALNPSAKLFSHLLVMCILMFVSNPKPTFFIWLFAVVIGIFFGGWTLSYLSKRLLPYLIFFILVFWMMAAFG
KGEETIWEWAWFRVTEESVGNGLTIALRMLGFVTYGLLFTSTTDLTQFIMSLIHQCRLSPKWAYGLLAGFRFVPLFQSEL
SQMKAAHKIRGYKQKNSWKAFIRYALPLFSQGIRKSERIAVAMEARGFTGTKDRTYYQTAGLSGKDFVYFAGLASVAAGI
LLTF

Sequences:

>Translated_244_residues
MKSNGSLLSALNPSAKLFSHLLVMCILMFVSNPKPTFFIWLFAVVIGIFFGGWTLSYLSKRLLPYLIFFILVFWMMAAFG
KGEETIWEWAWFRVTEESVGNGLTIALRMLGFVTYGLLFTSTTDLTQFIMSLIHQCRLSPKWAYGLLAGFRFVPLFQSEL
SQMKAAHKIRGYKQKNSWKAFIRYALPLFSQGIRKSERIAVAMEARGFTGTKDRTYYQTAGLSGKDFVYFAGLASVAAGI
LLTF
>Mature_244_residues
MKSNGSLLSALNPSAKLFSHLLVMCILMFVSNPKPTFFIWLFAVVIGIFFGGWTLSYLSKRLLPYLIFFILVFWMMAAFG
KGEETIWEWAWFRVTEESVGNGLTIALRMLGFVTYGLLFTSTTDLTQFIMSLIHQCRLSPKWAYGLLAGFRFVPLFQSEL
SQMKAAHKIRGYKQKNSWKAFIRYALPLFSQGIRKSERIAVAMEARGFTGTKDRTYYQTAGLSGKDFVYFAGLASVAAGI
LLTF

Specific function: Part of the ABC transporter complex YkoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 27658; Mature: 27658

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCC
>Mature Secondary Structure
MKSNGSLLSALNPSAKLFSHLLVMCILMFVSNPKPTFFIWLFAVVIGIFFGGWTLSYLSK
CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLLPYLIFFILVFWMMAAFGKGEETIWEWAWFRVTEESVGNGLTIALRMLGFVTYGLLFT
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEEHHHHCCCHHHHHHHHHHHHHHHHHH
STTDLTQFIMSLIHQCRLSPKWAYGLLAGFRFVPLFQSELSQMKAAHKIRGYKQKNSWKA
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
FIRYALPLFSQGIRKSERIAVAMEARGFTGTKDRTYYQTAGLSGKDFVYFAGLASVAAGI
HHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
LLTF
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]