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The map label for this gene is licT [H]

Identifier: 52787878

GI number: 52787878

Start: 4032210

End: 4033043

Strand: Reverse

Name: licT [H]

Synonym: BLi04201

Alternate gene names: 52787878

Gene position: 4033043-4032210 (Counterclockwise)

Preceding gene: 52787879

Following gene: 52787877

Centisome position: 95.51

GC content: 42.09

Gene sequence:

>834_bases
GTGAAAATTGCCAAAGTGATCAACAACAATGTGATCAGTGTTTTAAATGAACAGGGTCAGGAATTAGTGGTCATGGGCAG
GGGAATCGCTTTTCAAAAAAAGCCTGGCGAAGCGGTGGATGAATCGAGAATCGAGAAGATTTTCAGGCTTGATAATAAAG
ATGTATCAGAAAGGTTTAAGACGCTGTTGGACGAAATTCCAATTGAATTTATGGAAATGTCTGAAGAAATTATCTCCTAT
GCGAAATTAAAGCTCGGCAAAAAGCTGAATGACAGCATTTATGTCTCGCTGACCGACCATATTCATTTCGCCGTCGAACG
GCATAAAAAGGGACTGGATATTAAAAATGCCCTGCTTTGGGAGACGAAACGGCTGTATAAAGATGAGTTCGCCATCGGCA
AAGAGGCGCTGGCCATCATTGAAAAGAAGACGGGGACAGCTCTTCCGGAGGATGAAGCCGCCTTTATCGCGCTCCATATC
GTAAACGCCGAGCTGAATGAAGAAATGCCGAACATCGTCAATATTACGAAAGTCATGCAGGAGATTTTAAGCATCGTCAA
GTATCACTTTCATATCGAATTTGACGAAGAATCGCTTCACTATTACCGCTTCATTACCCATTTGAAATTTTTCGCCCAGC
GGCTGTTCAGCGGAACCTATATGGAAAGCCGGGACGACTTTTTATTTGAAACCGTCAAAAATAAGTACCGGGACGCTTAT
GTTTGTACAAATAAAATCAGGCAGTATATCGAAAAAGAATACGGTCATCAGCTGACAAACGAAGAGCTTCTGTATTTGAC
GATTCATATCGAGCGAGTCGTTCATCAAAAATAG

Upstream 100 bases:

>100_bases
GAAATATATTGACCTAGGCCAAAAAGGTTGTACAATCAATGTGTACCATTTGAAAAAAGAAGTATAAAAAAATCCCCTTA
AAAGATGGGAGTGGCGCGAT

Downstream 100 bases:

>100_bases
AGGATGATATCAAATGAAAGCGTTGACAATTGGATAAATGTATGCTACTTTTTACTTACATCAACTTATACAGGTTGTTA
GGATTGTTACTGATGATGCA

Product: LicT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MKIAKVINNNVISVLNEQGQELVVMGRGIAFQKKPGEAVDESRIEKIFRLDNKDVSERFKTLLDEIPIEFMEMSEEIISY
AKLKLGKKLNDSIYVSLTDHIHFAVERHKKGLDIKNALLWETKRLYKDEFAIGKEALAIIEKKTGTALPEDEAAFIALHI
VNAELNEEMPNIVNITKVMQEILSIVKYHFHIEFDEESLHYYRFITHLKFFAQRLFSGTYMESRDDFLFETVKNKYRDAY
VCTNKIRQYIEKEYGHQLTNEELLYLTIHIERVVHQK

Sequences:

>Translated_277_residues
MKIAKVINNNVISVLNEQGQELVVMGRGIAFQKKPGEAVDESRIEKIFRLDNKDVSERFKTLLDEIPIEFMEMSEEIISY
AKLKLGKKLNDSIYVSLTDHIHFAVERHKKGLDIKNALLWETKRLYKDEFAIGKEALAIIEKKTGTALPEDEAAFIALHI
VNAELNEEMPNIVNITKVMQEILSIVKYHFHIEFDEESLHYYRFITHLKFFAQRLFSGTYMESRDDFLFETVKNKYRDAY
VCTNKIRQYIEKEYGHQLTNEELLYLTIHIERVVHQK
>Mature_277_residues
MKIAKVINNNVISVLNEQGQELVVMGRGIAFQKKPGEAVDESRIEKIFRLDNKDVSERFKTLLDEIPIEFMEMSEEIISY
AKLKLGKKLNDSIYVSLTDHIHFAVERHKKGLDIKNALLWETKRLYKDEFAIGKEALAIIEKKTGTALPEDEAAFIALHI
VNAELNEEMPNIVNITKVMQEILSIVKYHFHIEFDEESLHYYRFITHLKFFAQRLFSGTYMESRDDFLFETVKNKYRDAY
VCTNKIRQYIEKEYGHQLTNEELLYLTIHIERVVHQK

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=273, Percent_Identity=42.8571428571429, Blast_Score=254, Evalue=3e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32549; Mature: 32549

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAKVINNNVISVLNEQGQELVVMGRGIAFQKKPGEAVDESRIEKIFRLDNKDVSERFK
CCHHHHHCCHHHHHHHHCCCEEEEEECCEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHH
TLLDEIPIEFMEMSEEIISYAKLKLGKKLNDSIYVSLTDHIHFAVERHKKGLDIKNALLW
HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHCCCCHHHHHHH
ETKRLYKDEFAIGKEALAIIEKKTGTALPEDEAAFIALHIVNAELNEEMPNIVNITKVMQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCHHHHCCCHHHHHHHHHH
EILSIVKYHFHIEFDEESLHYYRFITHLKFFAQRLFSGTYMESRDDFLFETVKNKYRDAY
HHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
VCTNKIRQYIEKEYGHQLTNEELLYLTIHIERVVHQK
HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHCCC
>Mature Secondary Structure
MKIAKVINNNVISVLNEQGQELVVMGRGIAFQKKPGEAVDESRIEKIFRLDNKDVSERFK
CCHHHHHCCHHHHHHHHCCCEEEEEECCEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHH
TLLDEIPIEFMEMSEEIISYAKLKLGKKLNDSIYVSLTDHIHFAVERHKKGLDIKNALLW
HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHCCCCHHHHHHH
ETKRLYKDEFAIGKEALAIIEKKTGTALPEDEAAFIALHIVNAELNEEMPNIVNITKVMQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCHHHHCCCHHHHHHHHHH
EILSIVKYHFHIEFDEESLHYYRFITHLKFFAQRLFSGTYMESRDDFLFETVKNKYRDAY
HHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
VCTNKIRQYIEKEYGHQLTNEELLYLTIHIERVVHQK
HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]