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The map label for this gene is cydA [H]

Identifier: 52787811

GI number: 52787811

Start: 3959941

End: 3961347

Strand: Reverse

Name: cydA [H]

Synonym: BLi04134

Alternate gene names: 52787811

Gene position: 3961347-3959941 (Counterclockwise)

Preceding gene: 52787814

Following gene: 52787810

Centisome position: 93.81

GC content: 47.76

Gene sequence:

>1407_bases
GTGGACGAACTCATTTTGGCAAGATTTCAATTTGCTTCAACAACGATCTTTCACTTTATTTTTGTACCGATGTCAATCGG
GCTTGTCTTTATGGTTGCTTTAATGGAAACCCTTTATGTCGCAAAGAAAAAAGACATTTACAGAACGATGGCTAAATTTT
GGGGGCACTTATTTTTAATTAATTTTGCAGTCGGTGTTGTCACCGGGATTTTACAAGAATTTCAGTTCGGAATGAACTGG
TCGGAGTACTCCCGCTTTGTCGGTGATGTATTCGGCGCTCCGCTCGCGGTGGAAGCGCTGCTCGCTTTCTTTATGGAATC
GACGTTTATCGGTTTGTGGATCTTCGGCTGGGACCGCCTTCCGAAGAAGATTCATTTGCTGTCCATTTGGCTTGTTTCGC
TTGGCACGATCATGTCGGCGTTTTGGATTCTAGCGGCCAACTCGTTTATGCAGGAGCCTGTCGGATTTGCGATCAAAAAC
GGACGCGCGGAAATGACCGATTTTTTTGCGATTATTAAAAACCCGCAGCTATGGGTTGAATTTCCGCACGTCATTTTCGG
TGCGCTTGCCACTGGGGCGTTTTTCATTGCCGGTGTCAGCGCGTATAAAATGCTGAAAAAACAGGAATTGCTCTTTTTTA
AAAAATCCTTTCAAATCGCGATGATTGTGGCGCTTGTTTCCGGGGGCGGCGTTGCGTTCAGCGGACATGAGCAGGCACAG
CATCTGATGAAGAGCCAGCCGATGAAAATGGCTGCCAGCGAAGCGCTTTGGGATGACAGCGGCGATCCGGCTGCATGGAC
GGTGCTTGCGAACATTGACACGGACAAGCAGGAAAACAAATCCGAGCTCAGCATCCCGTATGCGCTCAGCTATTTGGCTT
ATAAACAATTCAGCGGCGATGTGCCCGGAATGAAGACACTGCAAAAGCAATATGAAGAAAAATACGGAGAAGGAAATTAT
ATTCCGCCGGTGAAAACGACATTCTGGAGTTTCAGAATCATGGCCGGATCAGGACTTTTAATGATCGTTGCCGCTTTGAC
CGGTCTTTATCTCAGCTTCCGCAAAAGACTCGAAACAAGCAAATGGTTCTTGCGGACAATGGTGGCTTTGATCGCCTTTC
CATTCATTGCAAATACGGCGGGGTGGATCATGACTGAAATCGGACGCCAGCCGTGGACGGTGTTCGGTATTTTGACAACG
GCGCAGTCCGTGTCGCCGAACGTATCAGCGGGAATGCTGCTGTTCTCTGTCATCGCGTTTACAGCGATTTATCTTGTGCT
GGCGCTCGTTCTTGTCTACTTGTTTGTGCGGGAGATTAAAAAAGGGGCTGCACACCATGACCACCATCATGATGATTCCG
TATCGACAGACCCGTTTGATCAGGAGGTTTACCATGGTATCTCTTAA

Upstream 100 bases:

>100_bases
ATCATAATCACATTAATAAGATGCATGTGAAAGTCTGAGCAAGTGTGATGCCCATTTGGCAAACGGGCCCGGCTAGAACA
AAGAGGAGGAGACAGGAACA

Downstream 100 bases:

>100_bases
TGAATTTTGGTTTATATTAGTCGCTGTGCTGTTCATCGGTTTTTTCTTTCTTGAGGGCTTTGATTTCGGCGTCGGAATGG
CGACGCGGTTTCTCGGGCGC

Product: CydA

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MDELILARFQFASTTIFHFIFVPMSIGLVFMVALMETLYVAKKKDIYRTMAKFWGHLFLINFAVGVVTGILQEFQFGMNW
SEYSRFVGDVFGAPLAVEALLAFFMESTFIGLWIFGWDRLPKKIHLLSIWLVSLGTIMSAFWILAANSFMQEPVGFAIKN
GRAEMTDFFAIIKNPQLWVEFPHVIFGALATGAFFIAGVSAYKMLKKQELLFFKKSFQIAMIVALVSGGGVAFSGHEQAQ
HLMKSQPMKMAASEALWDDSGDPAAWTVLANIDTDKQENKSELSIPYALSYLAYKQFSGDVPGMKTLQKQYEEKYGEGNY
IPPVKTTFWSFRIMAGSGLLMIVAALTGLYLSFRKRLETSKWFLRTMVALIAFPFIANTAGWIMTEIGRQPWTVFGILTT
AQSVSPNVSAGMLLFSVIAFTAIYLVLALVLVYLFVREIKKGAAHHDHHHDDSVSTDPFDQEVYHGIS

Sequences:

>Translated_468_residues
MDELILARFQFASTTIFHFIFVPMSIGLVFMVALMETLYVAKKKDIYRTMAKFWGHLFLINFAVGVVTGILQEFQFGMNW
SEYSRFVGDVFGAPLAVEALLAFFMESTFIGLWIFGWDRLPKKIHLLSIWLVSLGTIMSAFWILAANSFMQEPVGFAIKN
GRAEMTDFFAIIKNPQLWVEFPHVIFGALATGAFFIAGVSAYKMLKKQELLFFKKSFQIAMIVALVSGGGVAFSGHEQAQ
HLMKSQPMKMAASEALWDDSGDPAAWTVLANIDTDKQENKSELSIPYALSYLAYKQFSGDVPGMKTLQKQYEEKYGEGNY
IPPVKTTFWSFRIMAGSGLLMIVAALTGLYLSFRKRLETSKWFLRTMVALIAFPFIANTAGWIMTEIGRQPWTVFGILTT
AQSVSPNVSAGMLLFSVIAFTAIYLVLALVLVYLFVREIKKGAAHHDHHHDDSVSTDPFDQEVYHGIS
>Mature_468_residues
MDELILARFQFASTTIFHFIFVPMSIGLVFMVALMETLYVAKKKDIYRTMAKFWGHLFLINFAVGVVTGILQEFQFGMNW
SEYSRFVGDVFGAPLAVEALLAFFMESTFIGLWIFGWDRLPKKIHLLSIWLVSLGTIMSAFWILAANSFMQEPVGFAIKN
GRAEMTDFFAIIKNPQLWVEFPHVIFGALATGAFFIAGVSAYKMLKKQELLFFKKSFQIAMIVALVSGGGVAFSGHEQAQ
HLMKSQPMKMAASEALWDDSGDPAAWTVLANIDTDKQENKSELSIPYALSYLAYKQFSGDVPGMKTLQKQYEEKYGEGNY
IPPVKTTFWSFRIMAGSGLLMIVAALTGLYLSFRKRLETSKWFLRTMVALIAFPFIANTAGWIMTEIGRQPWTVFGILTT
AQSVSPNVSAGMLLFSVIAFTAIYLVLALVLVYLFVREIKKGAAHHDHHHDDSVSTDPFDQEVYHGIS

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=523, Percent_Identity=38.0497131931166, Blast_Score=342, Evalue=3e-95,
Organism=Escherichia coli, GI1787212, Length=501, Percent_Identity=38.3233532934132, Blast_Score=326, Evalue=2e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52569; Mature: 52569

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELILARFQFASTTIFHFIFVPMSIGLVFMVALMETLYVAKKKDIYRTMAKFWGHLFLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NFAVGVVTGILQEFQFGMNWSEYSRFVGDVFGAPLAVEALLAFFMESTFIGLWIFGWDRL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECHHHC
PKKIHLLSIWLVSLGTIMSAFWILAANSFMQEPVGFAIKNGRAEMTDFFAIIKNPQLWVE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHCCCCCEEE
FPHVIFGALATGAFFIAGVSAYKMLKKQELLFFKKSFQIAMIVALVSGGGVAFSGHEQAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHH
HLMKSQPMKMAASEALWDDSGDPAAWTVLANIDTDKQENKSELSIPYALSYLAYKQFSGD
HHHHCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC
VPGMKTLQKQYEEKYGEGNYIPPVKTTFWSFRIMAGSGLLMIVAALTGLYLSFRKRLETS
CCCHHHHHHHHHHHCCCCCCCCCCHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
KWFLRTMVALIAFPFIANTAGWIMTEIGRQPWTVFGILTTAQSVSPNVSAGMLLFSVIAF
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHH
TAIYLVLALVLVYLFVREIKKGAAHHDHHHDDSVSTDPFDQEVYHGIS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MDELILARFQFASTTIFHFIFVPMSIGLVFMVALMETLYVAKKKDIYRTMAKFWGHLFLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NFAVGVVTGILQEFQFGMNWSEYSRFVGDVFGAPLAVEALLAFFMESTFIGLWIFGWDRL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECHHHC
PKKIHLLSIWLVSLGTIMSAFWILAANSFMQEPVGFAIKNGRAEMTDFFAIIKNPQLWVE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHCCCCCEEE
FPHVIFGALATGAFFIAGVSAYKMLKKQELLFFKKSFQIAMIVALVSGGGVAFSGHEQAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHH
HLMKSQPMKMAASEALWDDSGDPAAWTVLANIDTDKQENKSELSIPYALSYLAYKQFSGD
HHHHCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC
VPGMKTLQKQYEEKYGEGNYIPPVKTTFWSFRIMAGSGLLMIVAALTGLYLSFRKRLETS
CCCHHHHHHHHHHHCCCCCCCCCCHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
KWFLRTMVALIAFPFIANTAGWIMTEIGRQPWTVFGILTTAQSVSPNVSAGMLLFSVIAF
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHH
TAIYLVLALVLVYLFVREIKKGAAHHDHHHDDSVSTDPFDQEVYHGIS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]