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The map label for this gene is cydB [H]

Identifier: 52787810

GI number: 52787810

Start: 3958938

End: 3959954

Strand: Reverse

Name: cydB [H]

Synonym: BLi04133

Alternate gene names: 52787810

Gene position: 3959954-3958938 (Counterclockwise)

Preceding gene: 52787811

Following gene: 52787809

Centisome position: 93.78

GC content: 49.75

Gene sequence:

>1017_bases
ATGGTATCTCTTAATGAATTTTGGTTTATATTAGTCGCTGTGCTGTTCATCGGTTTTTTCTTTCTTGAGGGCTTTGATTT
CGGCGTCGGAATGGCGACGCGGTTTCTCGGGCGCAACGATCTTGAACGGAGGGTGATGATCAATACGATCGGTCCTTTCT
GGGATGCAAATGAAGTCTGGCTGCTGACCGGGGGAGGCGCGATTTTCGCCGCTTTTCCGAACTGGTATGCCACGATGTTC
AGCGGATATTACATTCCGTTTGTCTTTGTTCTTCTTGCATTGATCGGCCGCGGGGTCGCGTTTGAATTTAGAGGAAAAGT
CGAAACCGCAAAATGGAAGAATACATGGGATTGGGTCGTATTTTTCGGCAGCATTCTGCCGCCGTTTTTGTTCGGTGTAT
TGTTTGCGAGCATCCTGCGCGGCATGCCGATTGATGCCGATATGAATCTGCACGCCGGTTTTACCGATTATGTGAACGTC
TATTCCGTGACAGGGGGAGTCGCCGTTACGCTTCTCTGCCTGCTGCACGGCCTGATCTTTATTACATTGAGAACGGAAGC
CGATTTGCGCGACCGGGCAAGACAGCTGGCCAAAAAAGTCGTATTCGCCGTTTTGGCGGCGCTTGTTGCCTTTGTTGCAT
TATCCATTTTTGAAACGGACTTGTTCACGGGCAGGGGGCATGTGACGATACCGCTTGCGGCTCTGATTGTCGTTTGCTAT
GTGCTGTCGATCGTGTTTATGAAACAAAAACGCGACGGCTGGACATTTGCCATGACGGGCGCAGGGATCGCTCTTACAGT
GGCGACGATTTTCACTGCGCTGTTCCCGCGCGTCATGATCAGCTCGGTGAAAAGCGCATATGACTTAACCGTTTATAATG
CTTCATCAGGCGACTATTCTTTAAAGGTTATGACGATCGTCGCGCTGGCACTGCTTCCGTTCGTGCTGGGCTATCAGATC
TGGAGCTACTATGTTTTTAGAAAACGGGTCAGCAGCAAGGAGCCAATGATTTATTAA

Upstream 100 bases:

>100_bases
GTCTACTTGTTTGTGCGGGAGATTAAAAAAGGGGCTGCACACCATGACCACCATCATGATGATTCCGTATCGACAGACCC
GTTTGATCAGGAGGTTTACC

Downstream 100 bases:

>100_bases
TGGGAAAAGATCTTTTGCAATATAAAGGGATGAAACGAATACTTGCAGTACTCACTGTCCTGACATGCATGCAGGGCGCC
GCCATTATCATGCAGGCCGA

Product: CydB

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MVSLNEFWFILVAVLFIGFFFLEGFDFGVGMATRFLGRNDLERRVMINTIGPFWDANEVWLLTGGGAIFAAFPNWYATMF
SGYYIPFVFVLLALIGRGVAFEFRGKVETAKWKNTWDWVVFFGSILPPFLFGVLFASILRGMPIDADMNLHAGFTDYVNV
YSVTGGVAVTLLCLLHGLIFITLRTEADLRDRARQLAKKVVFAVLAALVAFVALSIFETDLFTGRGHVTIPLAALIVVCY
VLSIVFMKQKRDGWTFAMTGAGIALTVATIFTALFPRVMISSVKSAYDLTVYNASSGDYSLKVMTIVALALLPFVLGYQI
WSYYVFRKRVSSKEPMIY

Sequences:

>Translated_338_residues
MVSLNEFWFILVAVLFIGFFFLEGFDFGVGMATRFLGRNDLERRVMINTIGPFWDANEVWLLTGGGAIFAAFPNWYATMF
SGYYIPFVFVLLALIGRGVAFEFRGKVETAKWKNTWDWVVFFGSILPPFLFGVLFASILRGMPIDADMNLHAGFTDYVNV
YSVTGGVAVTLLCLLHGLIFITLRTEADLRDRARQLAKKVVFAVLAALVAFVALSIFETDLFTGRGHVTIPLAALIVVCY
VLSIVFMKQKRDGWTFAMTGAGIALTVATIFTALFPRVMISSVKSAYDLTVYNASSGDYSLKVMTIVALALLPFVLGYQI
WSYYVFRKRVSSKEPMIY
>Mature_338_residues
MVSLNEFWFILVAVLFIGFFFLEGFDFGVGMATRFLGRNDLERRVMINTIGPFWDANEVWLLTGGGAIFAAFPNWYATMF
SGYYIPFVFVLLALIGRGVAFEFRGKVETAKWKNTWDWVVFFGSILPPFLFGVLFASILRGMPIDADMNLHAGFTDYVNV
YSVTGGVAVTLLCLLHGLIFITLRTEADLRDRARQLAKKVVFAVLAALVAFVALSIFETDLFTGRGHVTIPLAALIVVCY
VLSIVFMKQKRDGWTFAMTGAGIALTVATIFTALFPRVMISSVKSAYDLTVYNASSGDYSLKVMTIVALALLPFVLGYQI
WSYYVFRKRVSSKEPMIY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=366, Percent_Identity=36.3387978142077, Blast_Score=228, Evalue=4e-61,
Organism=Escherichia coli, GI1787213, Length=367, Percent_Identity=31.0626702997275, Blast_Score=184, Evalue=6e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37803; Mature: 37803

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSLNEFWFILVAVLFIGFFFLEGFDFGVGMATRFLGRNDLERRVMINTIGPFWDANEVW
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHEEEECCCCCCCCCCEE
LLTGGGAIFAAFPNWYATMFSGYYIPFVFVLLALIGRGVAFEFRGKVETAKWKNTWDWVV
EEECCCEEEEECCHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCEEECCCCCCHHHHH
FFGSILPPFLFGVLFASILRGMPIDADMNLHAGFTDYVNVYSVTGGVAVTLLCLLHGLIF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHE
ITLRTEADLRDRARQLAKKVVFAVLAALVAFVALSIFETDLFTGRGHVTIPLAALIVVCY
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHH
VLSIVFMKQKRDGWTFAMTGAGIALTVATIFTALFPRVMISSVKSAYDLTVYNASSGDYS
HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCC
LKVMTIVALALLPFVLGYQIWSYYVFRKRVSSKEPMIY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVSLNEFWFILVAVLFIGFFFLEGFDFGVGMATRFLGRNDLERRVMINTIGPFWDANEVW
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHEEEECCCCCCCCCCEE
LLTGGGAIFAAFPNWYATMFSGYYIPFVFVLLALIGRGVAFEFRGKVETAKWKNTWDWVV
EEECCCEEEEECCHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCEEECCCCCCHHHHH
FFGSILPPFLFGVLFASILRGMPIDADMNLHAGFTDYVNVYSVTGGVAVTLLCLLHGLIF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHE
ITLRTEADLRDRARQLAKKVVFAVLAALVAFVALSIFETDLFTGRGHVTIPLAALIVVCY
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHH
VLSIVFMKQKRDGWTFAMTGAGIALTVATIFTALFPRVMISSVKSAYDLTVYNASSGDYS
HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCC
LKVMTIVALALLPFVLGYQIWSYYVFRKRVSSKEPMIY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]