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The map label for this gene is ywaC [H]

Identifier: 52787755

GI number: 52787755

Start: 3902451

End: 3903110

Strand: Reverse

Name: ywaC [H]

Synonym: BLi04078

Alternate gene names: 52787755

Gene position: 3903110-3902451 (Counterclockwise)

Preceding gene: 52787763

Following gene: 52787754

Centisome position: 92.43

GC content: 43.03

Gene sequence:

>660_bases
ATGGATATGGCGATAGATAAGATGATAGGACTGCCTGAAGCCCAGATAGAAGATTTGAGAAACCTGATGGAGGACTGGAA
GAACGAACTCCTCGTCTATAAATTTGCCTTGGATCAAATGGATACGAAGTTTTCGATTATCAGCCAGGAATATAATTTAA
TTCACGGCCACAACCCGATTGAACATACGAAATCAAGGGTGAAAAGCTTTGAAAGCCTGATTAACAAGCTTGTGCGGAAG
GGCTGCGATATTACGACAAAGGCCGCTAAGGAGCACATCAATGATATCGCCGGTCTCAGAATCGTCTGCTCGTTTTTATC
CGACATTTACAATATGGTTGAAGTGCTGAAGGAACATGAAGACATCAAAATTTTAAAAATGAAGGACTACATTAAAAATC
CGAAGCCGAACGGATACAGGAGTCTTCACTTAATTGTAGAAGTGCCCGTTTACTTGACCAACCGCGTCGAGCACGCCAAG
GTGGAGATTCAAATCAGGACGATCGCGATGGATTTCTGGGCGAGCCTCGAGCATAAAATCTACTACAAATTGAACAATGA
AGTGCCGAACCAGCTCACTGATGAGCTGAAAGAAGCGGCTGACATCGCGAACTACTTGGATGAAAAGATGCTTCATATTC
GAACAAAAGCGGATCAATAA

Upstream 100 bases:

>100_bases
TATTTTTTGATCTCCGCTTTAAGTCGAAACTTTACCATGGAGGTACCCGTCTATTAACTGAAAAAACGAAACGAAATGAT
GTTATAAGGAGAAAAATACA

Downstream 100 bases:

>100_bases
AAGGAAGCCGGGCTAAAGAAATGCCCGGCTGCTATTTTTTTCTGCCGCTTGACCCGAAGTTGTCAATGTTGATATCAACA
TGATATGTAATATCGGCTTC

Product: YwaC

Products: NA

Alternate protein names: (p)ppGpp synthase ywaC; Small alarmone synthase 2; SAS 2 [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MDMAIDKMIGLPEAQIEDLRNLMEDWKNELLVYKFALDQMDTKFSIISQEYNLIHGHNPIEHTKSRVKSFESLINKLVRK
GCDITTKAAKEHINDIAGLRIVCSFLSDIYNMVEVLKEHEDIKILKMKDYIKNPKPNGYRSLHLIVEVPVYLTNRVEHAK
VEIQIRTIAMDFWASLEHKIYYKLNNEVPNQLTDELKEAADIANYLDEKMLHIRTKADQ

Sequences:

>Translated_219_residues
MDMAIDKMIGLPEAQIEDLRNLMEDWKNELLVYKFALDQMDTKFSIISQEYNLIHGHNPIEHTKSRVKSFESLINKLVRK
GCDITTKAAKEHINDIAGLRIVCSFLSDIYNMVEVLKEHEDIKILKMKDYIKNPKPNGYRSLHLIVEVPVYLTNRVEHAK
VEIQIRTIAMDFWASLEHKIYYKLNNEVPNQLTDELKEAADIANYLDEKMLHIRTKADQ
>Mature_219_residues
MDMAIDKMIGLPEAQIEDLRNLMEDWKNELLVYKFALDQMDTKFSIISQEYNLIHGHNPIEHTKSRVKSFESLINKLVRK
GCDITTKAAKEHINDIAGLRIVCSFLSDIYNMVEVLKEHEDIKILKMKDYIKNPKPNGYRSLHLIVEVPVYLTNRVEHAK
VEIQIRTIAMDFWASLEHKIYYKLNNEVPNQLTDELKEAADIANYLDEKMLHIRTKADQ

Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. activities in respo

COG id: COG2357

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the relA/spoT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007685 [H]

Pfam domain/function: PF04607 RelA_SpoT [H]

EC number: =2.7.6.5 [H]

Molecular weight: Translated: 25613; Mature: 25613

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMAIDKMIGLPEAQIEDLRNLMEDWKNELLVYKFALDQMDTKFSIISQEYNLIHGHNPI
CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHEEHHHHHHHHCHHHHHHHHHHHHHCCCCCH
EHTKSRVKSFESLINKLVRKGCDITTKAAKEHINDIAGLRIVCSFLSDIYNMVEVLKEHE
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DIKILKMKDYIKNPKPNGYRSLHLIVEVPVYLTNRVEHAKVEIQIRTIAMDFWASLEHKI
CEEEEEEHHHHCCCCCCCCEEEEEEEEEHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHE
YYKLNNEVPNQLTDELKEAADIANYLDEKMLHIRTKADQ
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDMAIDKMIGLPEAQIEDLRNLMEDWKNELLVYKFALDQMDTKFSIISQEYNLIHGHNPI
CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHEEHHHHHHHHCHHHHHHHHHHHHHCCCCCH
EHTKSRVKSFESLINKLVRKGCDITTKAAKEHINDIAGLRIVCSFLSDIYNMVEVLKEHE
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DIKILKMKDYIKNPKPNGYRSLHLIVEVPVYLTNRVEHAKVEIQIRTIAMDFWASLEHKI
CEEEEEEHHHHCCCCCCCCEEEEEEEEEHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHE
YYKLNNEVPNQLTDELKEAADIANYLDEKMLHIRTKADQ
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]