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The map label for this gene is ydbD [H]

Identifier: 52787561

GI number: 52787561

Start: 3704936

End: 3705757

Strand: Reverse

Name: ydbD [H]

Synonym: BLi03883

Alternate gene names: 52787561

Gene position: 3705757-3704936 (Counterclockwise)

Preceding gene: 52787563

Following gene: 52787560

Centisome position: 87.76

GC content: 50.49

Gene sequence:

>822_bases
TTGTTCAAGCATACGAAAGTGCTGCAGTACCCTGCCAAACCTGAAAGACCCGACCCTGTCTTCGCAAAGAAAATGCAGGA
GATACTCGGCGGCCAGTACGGAGAAATATCTGTGGCGATGCAATACCTTTTTCAAGGGTGGAATACGCGGGGAAATGAAA
AGTATAAAGATTTGCTGATGGATACGGCGGCAGAAGAAATCGGACACGTCGAAATGATTGCGACGATGATTGCACGGCTG
CTTGAAGACGCTCCGGTTTACGAGCAGGAAAAAGCAGCAGACGATCCTGTCATCGGCGCCATTATGGGCGGAATGAACCC
TCATCACGCAATCGTTTCAGGTCTGGGGGCCATGCCTGAAAACAGCACCGGCGTTCCTTGGAATGCAGGCTATATTGTAG
CGAGCGGCAACCTTCTGGCCGACCTGCGCGCAAATGTCAACGCTGAATCGCAAGGCAGACTGCAAGTCGCACGGCTGTAC
GAAATGACGGATGACAAAGGCGTACAAGATATGCTCGGTTTTCTTTTGGCAAGAGATACGATGCACCAAAACCAGTGGAT
TGCCGCGATCAAAGAGCTGGAAGAAAAAGAAGGCGTCATCGTGCCCGGTACCGTTCCGCCAGAATATGAAAAAGAAGAAG
TTTCGCACTCTTTATACAATTTTTCGGATGGAGAAGAAAGCGCACAGTTTGAGTGGCTGATAGGGAAGGCGCCGGACGGA
GCGGAATTTCACTATGAGAGCGGCCCTGTCGCATATGGAGAAAAACCGGTCTTGAAGCCCGCTCCAAAACGAAGCCACAA
TACACCTGACTATGGAGAATAA

Upstream 100 bases:

>100_bases
ACCTGTTTTAAGCACATCCCGAACCTGTTGTACGGTTTTATGATTTCCCTTTTCGGCTAAATCAAAAACGAGGATACAAA
AAACGGAGGAGTGATCTGAT

Downstream 100 bases:

>100_bases
AAAGAGCCGAACGGCTCTTTTTTTATTTTTTAAAATGACAAAACACTTCGTAAATATTAAAATAAGTGACAGATTTGCAG
ATTTTTTTATTGTCAGGTAA

Product: YdbD

Products: NA

Alternate protein names: General stress protein 80; GSP80 [H]

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MFKHTKVLQYPAKPERPDPVFAKKMQEILGGQYGEISVAMQYLFQGWNTRGNEKYKDLLMDTAAEEIGHVEMIATMIARL
LEDAPVYEQEKAADDPVIGAIMGGMNPHHAIVSGLGAMPENSTGVPWNAGYIVASGNLLADLRANVNAESQGRLQVARLY
EMTDDKGVQDMLGFLLARDTMHQNQWIAAIKELEEKEGVIVPGTVPPEYEKEEVSHSLYNFSDGEESAQFEWLIGKAPDG
AEFHYESGPVAYGEKPVLKPAPKRSHNTPDYGE

Sequences:

>Translated_273_residues
MFKHTKVLQYPAKPERPDPVFAKKMQEILGGQYGEISVAMQYLFQGWNTRGNEKYKDLLMDTAAEEIGHVEMIATMIARL
LEDAPVYEQEKAADDPVIGAIMGGMNPHHAIVSGLGAMPENSTGVPWNAGYIVASGNLLADLRANVNAESQGRLQVARLY
EMTDDKGVQDMLGFLLARDTMHQNQWIAAIKELEEKEGVIVPGTVPPEYEKEEVSHSLYNFSDGEESAQFEWLIGKAPDG
AEFHYESGPVAYGEKPVLKPAPKRSHNTPDYGE
>Mature_273_residues
MFKHTKVLQYPAKPERPDPVFAKKMQEILGGQYGEISVAMQYLFQGWNTRGNEKYKDLLMDTAAEEIGHVEMIATMIARL
LEDAPVYEQEKAADDPVIGAIMGGMNPHHAIVSGLGAMPENSTGVPWNAGYIVASGNLLADLRANVNAESQGRLQVARLY
EMTDDKGVQDMLGFLLARDTMHQNQWIAAIKELEEKEGVIVPGTVPPEYEKEEVSHSLYNFSDGEESAQFEWLIGKAPDG
AEFHYESGPVAYGEKPVLKPAPKRSHNTPDYGE

Specific function: Unknown

COG id: COG3546

COG function: function code P; Mn-containing catalase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the manganese catalase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007760
- InterPro:   IPR012347
- InterPro:   IPR009078 [H]

Pfam domain/function: PF05067 Mn_catalase [H]

EC number: =1.11.1.6 [H]

Molecular weight: Translated: 30222; Mature: 30222

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKHTKVLQYPAKPERPDPVFAKKMQEILGGQYGEISVAMQYLFQGWNTRGNEKYKDLLM
CCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
DTAAEEIGHVEMIATMIARLLEDAPVYEQEKAADDPVIGAIMGGMNPHHAIVSGLGAMPE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHCCCCHHHHHHHHHCCCCC
NSTGVPWNAGYIVASGNLLADLRANVNAESQGRLQVARLYEMTDDKGVQDMLGFLLARDT
CCCCCCCCCCEEEECCCEEEEHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
MHQNQWIAAIKELEEKEGVIVPGTVPPEYEKEEVSHSLYNFSDGEESAQFEWLIGKAPDG
HHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCC
AEFHYESGPVAYGEKPVLKPAPKRSHNTPDYGE
CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFKHTKVLQYPAKPERPDPVFAKKMQEILGGQYGEISVAMQYLFQGWNTRGNEKYKDLLM
CCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
DTAAEEIGHVEMIATMIARLLEDAPVYEQEKAADDPVIGAIMGGMNPHHAIVSGLGAMPE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHCCCCHHHHHHHHHCCCCC
NSTGVPWNAGYIVASGNLLADLRANVNAESQGRLQVARLYEMTDDKGVQDMLGFLLARDT
CCCCCCCCCCEEEECCCEEEEHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
MHQNQWIAAIKELEEKEGVIVPGTVPPEYEKEEVSHSLYNFSDGEESAQFEWLIGKAPDG
HHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCC
AEFHYESGPVAYGEKPVLKPAPKRSHNTPDYGE
CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659 [H]