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The map label for this gene is kdgR [H]

Identifier: 52787508

GI number: 52787508

Start: 3654772

End: 3655788

Strand: Reverse

Name: kdgR [H]

Synonym: BLi03828

Alternate gene names: 52787508

Gene position: 3655788-3654772 (Counterclockwise)

Preceding gene: 52787511

Following gene: 52787507

Centisome position: 86.58

GC content: 48.38

Gene sequence:

>1017_bases
ATGAAGGATAAGCAAACAGCGAAAGTAACCATCAACGAAGTCGCCGCACATGCAGGCGTATCAAAATCAACGGTTTCCCG
TTATATCAACGGGAAGATTGATGCCATTTCACCGAAAAAGGTGAAAAGCATCAAAAAAGCGATCGAGGAGCTCAATTACC
GCCCAAGCCAGATGGCACAGGGGCTGAAGGTGAAAAAAAGCAAAGTTATCGGATTTTTGGTCGCCGATATTACAAACCCG
TTTTCAGTAGCCACCTTGAGAGGGGTGGAAGAGGTTTGCGATCAGTACGGATACAGCATCATGGTCTGCAACACGGACAA
CAGTCCTGAGAAAGAAAGGGAGATGCTGCACAAGCTGAACGCGCATTACATTGAAGGGCTGATTATTAATACGACGGGAA
GGAACAACGATGTGCTCTTGGATTTAATCAGCCAGGATGTATCGATTGTGCTCGTTGACCGGAAAGTGCCCGGGCTCAAG
ATCGATGCAGTCACAACGAACAACCGCGAAGTGACAAGTCAAATCGTCAATCTCATGTATGACAAAGGCTATGCCCAGGT
CGGTCTGTTTACCGAACCGATTAAGGGAATCAGTCCAAGGGAGGAAAGGGCCTCCGCCTATACAGAAATCGCGCTGGAAC
GAAACGCCGGCGGTACCCCTCTCGTATATGAGGCTGACGTCAAAGACAAAGAATCTCTATTACAGTCCGTCAAAAGCTTT
TTGGAAATGAAAGAAGGGAAAAAAGCCATTCTTGGAAACAACGGGCTTCTGATGCTGAAAATCATCAGCTGCCTTTATGA
GCTTGGCATTTCAATTCCGGAAGATGTCGGAATTGCCGGATTTGATGATACAGAATGGTATAAATTGATCGGTCCGGGCA
TTACGACCATCGCCCAGCCGTCGCATGAAATGGGCAGGGTCGCCATGGAGCGGATCATCAAACGGATTGAAGGAGACGAA
AGCGCCCCGCAGACGATTCAGCTTGAGGCGGAGCTTGTTCTCAGACAGTCGCTGTAG

Upstream 100 bases:

>100_bases
ATATTAAAAAAGACTCTTCCAAATTTTAAATGATGTGATATGCTGGTGGTATAAAGTTTTTGAAATCGGTTTCAAATCAT
AAGGTTATAGGAGTACTTGA

Downstream 100 bases:

>100_bases
AACTTGTCAAACGGAAACACTCATGGACCCGAAAACTTAGGGGAGAGTGTTTTCCCGCAACTGCTTTTGAAACCGGTACC
ATTTTGAAAGGAGAGTGAAA

Product: KdgR

Products: NA

Alternate protein names: Kdg operon repressor [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKDKQTAKVTINEVAAHAGVSKSTVSRYINGKIDAISPKKVKSIKKAIEELNYRPSQMAQGLKVKKSKVIGFLVADITNP
FSVATLRGVEEVCDQYGYSIMVCNTDNSPEKEREMLHKLNAHYIEGLIINTTGRNNDVLLDLISQDVSIVLVDRKVPGLK
IDAVTTNNREVTSQIVNLMYDKGYAQVGLFTEPIKGISPREERASAYTEIALERNAGGTPLVYEADVKDKESLLQSVKSF
LEMKEGKKAILGNNGLLMLKIISCLYELGISIPEDVGIAGFDDTEWYKLIGPGITTIAQPSHEMGRVAMERIIKRIEGDE
SAPQTIQLEAELVLRQSL

Sequences:

>Translated_338_residues
MKDKQTAKVTINEVAAHAGVSKSTVSRYINGKIDAISPKKVKSIKKAIEELNYRPSQMAQGLKVKKSKVIGFLVADITNP
FSVATLRGVEEVCDQYGYSIMVCNTDNSPEKEREMLHKLNAHYIEGLIINTTGRNNDVLLDLISQDVSIVLVDRKVPGLK
IDAVTTNNREVTSQIVNLMYDKGYAQVGLFTEPIKGISPREERASAYTEIALERNAGGTPLVYEADVKDKESLLQSVKSF
LEMKEGKKAILGNNGLLMLKIISCLYELGISIPEDVGIAGFDDTEWYKLIGPGITTIAQPSHEMGRVAMERIIKRIEGDE
SAPQTIQLEAELVLRQSL
>Mature_338_residues
MKDKQTAKVTINEVAAHAGVSKSTVSRYINGKIDAISPKKVKSIKKAIEELNYRPSQMAQGLKVKKSKVIGFLVADITNP
FSVATLRGVEEVCDQYGYSIMVCNTDNSPEKEREMLHKLNAHYIEGLIINTTGRNNDVLLDLISQDVSIVLVDRKVPGLK
IDAVTTNNREVTSQIVNLMYDKGYAQVGLFTEPIKGISPREERASAYTEIALERNAGGTPLVYEADVKDKESLLQSVKSF
LEMKEGKKAILGNNGLLMLKIISCLYELGISIPEDVGIAGFDDTEWYKLIGPGITTIAQPSHEMGRVAMERIIKRIEGDE
SAPQTIQLEAELVLRQSL

Specific function: Transcriptional repressor of the kdg operon for pectin utilization [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=332, Percent_Identity=29.5180722891566, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1790369, Length=343, Percent_Identity=25.3644314868805, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787948, Length=349, Percent_Identity=25.7879656160458, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788474, Length=338, Percent_Identity=26.0355029585799, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI48994940, Length=337, Percent_Identity=27.0029673590504, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1789202, Length=291, Percent_Identity=25.085910652921, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1786540, Length=316, Percent_Identity=26.8987341772152, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787580, Length=337, Percent_Identity=23.4421364985163, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1790715, Length=329, Percent_Identity=24.9240121580547, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789068, Length=344, Percent_Identity=24.7093023255814, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786268, Length=310, Percent_Identity=20.9677419354839, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787906, Length=340, Percent_Identity=22.0588235294118, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37298; Mature: 37298

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2 ; PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDKQTAKVTINEVAAHAGVSKSTVSRYINGKIDAISPKKVKSIKKAIEELNYRPSQMAQ
CCCCCCCEEEHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHC
GLKVKKSKVIGFLVADITNPFSVATLRGVEEVCDQYGYSIMVCNTDNSPEKEREMLHKLN
CCHHHHHHHHEEHEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHC
AHYIEGLIINTTGRNNDVLLDLISQDVSIVLVDRKVPGLKIDAVTTNNREVTSQIVNLMY
HHHHCCEEEECCCCCCCEEHEECCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHH
DKGYAQVGLFTEPIKGISPREERASAYTEIALERNAGGTPLVYEADVKDKESLLQSVKSF
HCCCCEECCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCEEEECCCCCHHHHHHHHHHH
LEMKEGKKAILGNNGLLMLKIISCLYELGISIPEDVGIAGFDDTEWYKLIGPGITTIAQP
HHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHEEECCCHHHHCCC
SHEMGRVAMERIIKRIEGDESAPQTIQLEAELVLRQSL
CHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCC
>Mature Secondary Structure
MKDKQTAKVTINEVAAHAGVSKSTVSRYINGKIDAISPKKVKSIKKAIEELNYRPSQMAQ
CCCCCCCEEEHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHC
GLKVKKSKVIGFLVADITNPFSVATLRGVEEVCDQYGYSIMVCNTDNSPEKEREMLHKLN
CCHHHHHHHHEEHEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHC
AHYIEGLIINTTGRNNDVLLDLISQDVSIVLVDRKVPGLKIDAVTTNNREVTSQIVNLMY
HHHHCCEEEECCCCCCCEEHEECCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHH
DKGYAQVGLFTEPIKGISPREERASAYTEIALERNAGGTPLVYEADVKDKESLLQSVKSF
HCCCCEECCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCEEEECCCCCHHHHHHHHHHH
LEMKEGKKAILGNNGLLMLKIISCLYELGISIPEDVGIAGFDDTEWYKLIGPGITTIAQP
HHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHEEECCCHHHHCCC
SHEMGRVAMERIIKRIEGDESAPQTIQLEAELVLRQSL
CHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]