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The map label for this gene is kdgT [H]

Identifier: 52787505

GI number: 52787505

Start: 3652013

End: 3652999

Strand: Reverse

Name: kdgT [H]

Synonym: BLi03825

Alternate gene names: 52787505

Gene position: 3652999-3652013 (Counterclockwise)

Preceding gene: 52787506

Following gene: 52787504

Centisome position: 86.51

GC content: 51.17

Gene sequence:

>987_bases
ATGATGAAAATTAAAGCAACGATTGAACGTGTGCCGGGCGGCATGATGATCATTCCGCTCTTTCTGGGCGCAACGCTGAA
TACATTTGCACCGGGAACCGCAGAGTTTTTCGGCGGATTTACAGGCGCCCTGATTACCGGAACGCTGCCGATTTTAGGAG
TATTTATCTTTTGCGTTGGCGCGACAATAGATTTTCGTTCTTCAGGATATATTGCGAGGAAGGGGCTGACGCTTCTGATC
GGCAAAGTCGGCTTTGCCGCATTATTGGGTTTGATCGCAGCGCAGTTCATTCCAGACGAAGGCATTCAAAGCGGGTTTTT
TGCCGGACTGTCCGTGCTGGCGATCGTAGCCGTTATGAATGAAACGAACGGCGGTCTGTATTTGGCGTTAATGAATCACA
TGGGAAGAAAGGAAGACGCCGGTGCTTTTGCCTTTATCAGCACGGAATCAGGCCCGTTTATGACGATGGTCACTTTCGGT
GTGACAGGGCTTGCGGCATTTCCTTGGGAGACGCTGGCTGCAACCGTCATCCCGTTTTTACTCGGCTGCATTCTCGGTAA
CCTTGACCCTGAATTGCGCGATTTGTTCGGAAAAGTCGTACCGGCGATCATTCCGTTCTTCGCATTTTCACTTGGAAACA
CGCTTGATTTTAACATGTTGATTCAATCCGGCCTTTTAGGCATTGTTGTCGGCGTATCAGTCGTCATTCTCTCGGGTGCA
TCTCTATACTTGCTGGACCGCTTTGTCGCAAGAGGAGACGGTGTCGCGGGAGTAGCGGCGTCATCAACGGCCGGGGCTGC
GGTAGCCGTCCCGTATGCACTTGCCGATGCAAACCCCGTGTTTGCGCCGGTAGCTGATTCAGCAACCGCGATCATCGCGA
CAAGCGTCATTGTCACCTCGCTTCTGACGCCGCTTGCAACCGTCTGGATCGAAAAACGGACGAAACAAAGAAAATCTCCG
AAACAAATGACGATTGATTACAAGTAA

Upstream 100 bases:

>100_bases
GGCTCAGCAGAAATAAAGCGTGCGCAGCGTGGTAAAGACTTCAGGTTTTGCAAGATCGACAGCTTTGCTTTTTCATTAAT
TTCTAGAATGGGAGAAAAAA

Downstream 100 bases:

>100_bases
TGTTGCCGCAGGCGCACCGGGACATTTGTCCGGGGCGTTTTTTTATGACCGTTTTTGAAACGTCACCAAATTGCTAAATT
TGACGAACATAATCTGTGCT

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease [H]

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MMKIKATIERVPGGMMIIPLFLGATLNTFAPGTAEFFGGFTGALITGTLPILGVFIFCVGATIDFRSSGYIARKGLTLLI
GKVGFAALLGLIAAQFIPDEGIQSGFFAGLSVLAIVAVMNETNGGLYLALMNHMGRKEDAGAFAFISTESGPFMTMVTFG
VTGLAAFPWETLAATVIPFLLGCILGNLDPELRDLFGKVVPAIIPFFAFSLGNTLDFNMLIQSGLLGIVVGVSVVILSGA
SLYLLDRFVARGDGVAGVAASSTAGAAVAVPYALADANPVFAPVADSATAIIATSVIVTSLLTPLATVWIEKRTKQRKSP
KQMTIDYK

Sequences:

>Translated_328_residues
MMKIKATIERVPGGMMIIPLFLGATLNTFAPGTAEFFGGFTGALITGTLPILGVFIFCVGATIDFRSSGYIARKGLTLLI
GKVGFAALLGLIAAQFIPDEGIQSGFFAGLSVLAIVAVMNETNGGLYLALMNHMGRKEDAGAFAFISTESGPFMTMVTFG
VTGLAAFPWETLAATVIPFLLGCILGNLDPELRDLFGKVVPAIIPFFAFSLGNTLDFNMLIQSGLLGIVVGVSVVILSGA
SLYLLDRFVARGDGVAGVAASSTAGAAVAVPYALADANPVFAPVADSATAIIATSVIVTSLLTPLATVWIEKRTKQRKSP
KQMTIDYK
>Mature_328_residues
MMKIKATIERVPGGMMIIPLFLGATLNTFAPGTAEFFGGFTGALITGTLPILGVFIFCVGATIDFRSSGYIARKGLTLLI
GKVGFAALLGLIAAQFIPDEGIQSGFFAGLSVLAIVAVMNETNGGLYLALMNHMGRKEDAGAFAFISTESGPFMTMVTFG
VTGLAAFPWETLAATVIPFLLGCILGNLDPELRDLFGKVVPAIIPFFAFSLGNTLDFNMLIQSGLLGIVVGVSVVILSGA
SLYLLDRFVARGDGVAGVAASSTAGAAVAVPYALADANPVFAPVADSATAIIATSVIVTSLLTPLATVWIEKRTKQRKSP
KQMTIDYK

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=322, Percent_Identity=50.6211180124224, Blast_Score=306, Evalue=1e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- InterPro:   IPR018395
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 34160; Mature: 34160

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKIKATIERVPGGMMIIPLFLGATLNTFAPGTAEFFGGFTGALITGTLPILGVFIFCVG
CCEEHHHHHHCCCCEEEHHHHHCCHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHC
ATIDFRSSGYIARKGLTLLIGKVGFAALLGLIAAQFIPDEGIQSGFFAGLSVLAIVAVMN
CCEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
ETNGGLYLALMNHMGRKEDAGAFAFISTESGPFMTMVTFGVTGLAAFPWETLAATVIPFL
CCCCCEEEEEHHHCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHH
LGCILGNLDPELRDLFGKVVPAIIPFFAFSLGNTLDFNMLIQSGLLGIVVGVSVVILSGA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
SLYLLDRFVARGDGVAGVAASSTAGAAVAVPYALADANPVFAPVADSATAIIATSVIVTS
HHHHHHHHHHCCCCCCCEECCCCCCCCEEEHHHCCCCCCCEEECCCCHHHHHHHHHHHHH
LLTPLATVWIEKRTKQRKSPKQMTIDYK
HHHHHHHHHHHHHHHHCCCCCCEEECCC
>Mature Secondary Structure
MMKIKATIERVPGGMMIIPLFLGATLNTFAPGTAEFFGGFTGALITGTLPILGVFIFCVG
CCEEHHHHHHCCCCEEEHHHHHCCHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHC
ATIDFRSSGYIARKGLTLLIGKVGFAALLGLIAAQFIPDEGIQSGFFAGLSVLAIVAVMN
CCEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
ETNGGLYLALMNHMGRKEDAGAFAFISTESGPFMTMVTFGVTGLAAFPWETLAATVIPFL
CCCCCEEEEEHHHCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHH
LGCILGNLDPELRDLFGKVVPAIIPFFAFSLGNTLDFNMLIQSGLLGIVVGVSVVILSGA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
SLYLLDRFVARGDGVAGVAASSTAGAAVAVPYALADANPVFAPVADSATAIIATSVIVTS
HHHHHHHHHHCCCCCCCEECCCCCCCCEEEHHHCCCCCCCEEECCCCHHHHHHHHHHHHH
LLTPLATVWIEKRTKQRKSPKQMTIDYK
HHHHHHHHHHHHHHHHCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]