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The map label for this gene is yvcD [H]

Identifier: 52787412

GI number: 52787412

Start: 3553708

End: 3555168

Strand: Reverse

Name: yvcD [H]

Synonym: BLi03729

Alternate gene names: 52787412

Gene position: 3555168-3553708 (Counterclockwise)

Preceding gene: 52787414

Following gene: 52787411

Centisome position: 84.19

GC content: 46.61

Gene sequence:

>1461_bases
GTGGGAAAGTACACTTCTGAACATCATAAAGATTCGAGAATTGTCCAGCTGTTCCAAGATGGGCAATATTTTTATCATAA
AGGGCTCAAAGCATACAGAGAGCGAAATTTATCCCGCGCGAGCAAGCTCATACAGAGAGCGATTTTTCTTGAACCTGAAA
ACACGGGAATGCTGTCCCAACTTGCGGTTATTTATACGGAAATGGGCTTTTATCAGCAATCAAACGAACTTTTGGACTTT
ATCCTGAAGAACATCAACGAAAAAATGACTGAATGCTACTATTTTAAAGCGAACAACTATGCGCACCTCGGTCTTTTTCA
AGAGGCCTATAAAGCGGCGGAGACTTATTTAAAGGAAGATCCGGACGGCGAGTTCAGCGAGGAAAATGCGGAGCTGCTTG
ATTTATTGGATATGGGAGAGGAAGATCAGGGCTATTCGCAGTTCGATCAGGACGACCTGATTCTGAAACAGGATCGGGCC
AAATCACTGCTGGAAAATGGACAGCTTCAGGAATCGATCGCGATGCTTGAAGAAATTATTTCCGATTACCCTGAGTTTTG
GTCGGCTTATAACAATCTTGCACTCGCATACTTTTATGCCGGGGACGTTCAGAAAGCCAAAACGACGGTTTTTACGGTCT
TGGAAAAAAGTCATGGAAACCTGCATGCGCTTTGCAATCTTCTTATTTTTTATCACTATGAACGACGGGACGATAAGGTC
GAGGCGCTTTCCGAACAGCTTTCAAATATTTATCCGATGCTTTTTGAGCAAAGGTATAAGCTCGGTGCCACGCTAGCCCT
TGTCGGCCGATACGATCTCGGGTTTAAATGGCTGAAATCACTCTACCGCATGGGATTTGAAGGGGATGAGACCTTTTATT
ACTGGCTTGCCTGCTCGGCTTATTACACGGGCCGCGTTCAATTTGCCCGGTCTGTATGGAAAAAGATGCAGGAAGAGTAT
CCGGATGACGCCCGCATGGAGCCGTGGAAAGAACGGAAGGAAAAGAGACCTGTCCAGCGACCGCTCGAGGAGCGCCTTGC
CGCATATTATATCAGCGGAAGAAAAGGGGAAAAAGCCCAGCTGAAAGCGGTGCTTGATTCACAGATGGCAAAAACGCCGT
TTGAAGATCAGTTTGTCAGACTTGTGCTTTACGGGGAAAGCGGTGCAGCCGTTGATTCAAAAGACGCGCTACTTGCTTAC
AGGACTGCAAAAGCGATTGAACAAGCGGATCAGTCGGCGATGGAGCAGGAGGCCATGTGCTTTTGGATTTTCCATGTCAT
TCAGCAGATCAGGGCTTACGGGCTTCAGCTGAAAAATGCCGGCGGGCTTGCGGCAGCGATCTATTACATTTGGAAGACGG
AGCATCAGGAGCGTTTGACAAAAGCCGAAACCGCTAAAATTTTCCAAATATCGCCCGGGACGCTTTCAAAGTATGAACGT
ACATTAAAAGAGCATCTATAG

Upstream 100 bases:

>100_bases
AAATGAAGAGAATTTTCTCGAAACTTGTTTTTGGCCTGTTAAGCCTGCTGGAAACTATGTTATACTACTCACGGTATATA
GTTTGAAATGGAGGGTATCT

Downstream 100 bases:

>100_bases
AAACAGGTGTGAACTTCATTGTTCAGCCTGTTTTATTATGTGAGCAAAAAAATAGCGATTATTCATGATATTTTATAGGA
TATGGGTAAGGAAGTTATAA

Product: YvcD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 485

Protein sequence:

>486_residues
MGKYTSEHHKDSRIVQLFQDGQYFYHKGLKAYRERNLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLDF
ILKNINEKMTECYYFKANNYAHLGLFQEAYKAAETYLKEDPDGEFSEENAELLDLLDMGEEDQGYSQFDQDDLILKQDRA
KSLLENGQLQESIAMLEEIISDYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDDKV
EALSEQLSNIYPMLFEQRYKLGATLALVGRYDLGFKWLKSLYRMGFEGDETFYYWLACSAYYTGRVQFARSVWKKMQEEY
PDDARMEPWKERKEKRPVQRPLEERLAAYYISGRKGEKAQLKAVLDSQMAKTPFEDQFVRLVLYGESGAAVDSKDALLAY
RTAKAIEQADQSAMEQEAMCFWIFHVIQQIRAYGLQLKNAGGLAAAIYYIWKTEHQERLTKAETAKIFQISPGTLSKYER
TLKEHL

Sequences:

>Translated_486_residues
MGKYTSEHHKDSRIVQLFQDGQYFYHKGLKAYRERNLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLDF
ILKNINEKMTECYYFKANNYAHLGLFQEAYKAAETYLKEDPDGEFSEENAELLDLLDMGEEDQGYSQFDQDDLILKQDRA
KSLLENGQLQESIAMLEEIISDYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDDKV
EALSEQLSNIYPMLFEQRYKLGATLALVGRYDLGFKWLKSLYRMGFEGDETFYYWLACSAYYTGRVQFARSVWKKMQEEY
PDDARMEPWKERKEKRPVQRPLEERLAAYYISGRKGEKAQLKAVLDSQMAKTPFEDQFVRLVLYGESGAAVDSKDALLAY
RTAKAIEQADQSAMEQEAMCFWIFHVIQQIRAYGLQLKNAGGLAAAIYYIWKTEHQERLTKAETAKIFQISPGTLSKYER
TLKEHL
>Mature_485_residues
GKYTSEHHKDSRIVQLFQDGQYFYHKGLKAYRERNLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLDFI
LKNINEKMTECYYFKANNYAHLGLFQEAYKAAETYLKEDPDGEFSEENAELLDLLDMGEEDQGYSQFDQDDLILKQDRAK
SLLENGQLQESIAMLEEIISDYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDDKVE
ALSEQLSNIYPMLFEQRYKLGATLALVGRYDLGFKWLKSLYRMGFEGDETFYYWLACSAYYTGRVQFARSVWKKMQEEYP
DDARMEPWKERKEKRPVQRPLEERLAAYYISGRKGEKAQLKAVLDSQMAKTPFEDQFVRLVLYGESGAAVDSKDALLAYR
TAKAIEQADQSAMEQEAMCFWIFHVIQQIRAYGLQLKNAGGLAAAIYYIWKTEHQERLTKAETAKIFQISPGTLSKYERT
LKEHL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56708; Mature: 56577

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKYTSEHHKDSRIVQLFQDGQYFYHKGLKAYRERNLSRASKLIQRAIFLEPENTGMLSQ
CCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHH
LAVIYTEMGFYQQSNELLDFILKNINEKMTECYYFKANNYAHLGLFQEAYKAAETYLKED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEHHHHHHHHHHHHHHHCCC
PDGEFSEENAELLDLLDMGEEDQGYSQFDQDDLILKQDRAKSLLENGQLQESIAMLEEII
CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
SDYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDDKV
HHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH
EALSEQLSNIYPMLFEQRYKLGATLALVGRYDLGFKWLKSLYRMGFEGDETFYYWLACSA
HHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEEHH
YYTGRVQFARSVWKKMQEEYPDDARMEPWKERKEKRPVQRPLEERLAAYYISGRKGEKAQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHH
LKAVLDSQMAKTPFEDQFVRLVLYGESGAAVDSKDALLAYRTAKAIEQADQSAMEQEAMC
HHHHHHHHHHCCCCHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FWIFHVIQQIRAYGLQLKNAGGLAAAIYYIWKTEHQERLTKAETAKIFQISPGTLSKYER
HHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHCHHHHHHHHHHHCEEEEECCCHHHHHHH
TLKEHL
HHHHCC
>Mature Secondary Structure 
GKYTSEHHKDSRIVQLFQDGQYFYHKGLKAYRERNLSRASKLIQRAIFLEPENTGMLSQ
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHH
LAVIYTEMGFYQQSNELLDFILKNINEKMTECYYFKANNYAHLGLFQEAYKAAETYLKED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEHHHHHHHHHHHHHHHCCC
PDGEFSEENAELLDLLDMGEEDQGYSQFDQDDLILKQDRAKSLLENGQLQESIAMLEEII
CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
SDYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDDKV
HHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH
EALSEQLSNIYPMLFEQRYKLGATLALVGRYDLGFKWLKSLYRMGFEGDETFYYWLACSA
HHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEEHH
YYTGRVQFARSVWKKMQEEYPDDARMEPWKERKEKRPVQRPLEERLAAYYISGRKGEKAQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHH
LKAVLDSQMAKTPFEDQFVRLVLYGESGAAVDSKDALLAYRTAKAIEQADQSAMEQEAMC
HHHHHHHHHHCCCCHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FWIFHVIQQIRAYGLQLKNAGGLAAAIYYIWKTEHQERLTKAETAKIFQISPGTLSKYER
HHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHCHHHHHHHHHHHCEEEEECCCHHHHHHH
TLKEHL
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]