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The map label for this gene is ydfF [H]

Identifier: 52787401

GI number: 52787401

Start: 3546019

End: 3546714

Strand: Direct

Name: ydfF [H]

Synonym: BLi03718

Alternate gene names: 52787401

Gene position: 3546019-3546714 (Clockwise)

Preceding gene: 52787399

Following gene: 52787402

Centisome position: 83.98

GC content: 53.88

Gene sequence:

>696_bases
ATGAACGTGAATCCAAATATCGCCGAGGTCGCCAAGCTTGTCACCGATCCGTCGCGGGCGGCGATTTTAACCGCATTGCT
TGATGACCGGTATTATACGGCTACCGAGCTGGCCGGATATGCGGGAATCAAGCAGCAGACAGCAAGCTTTCACCTTTCCA
AGCTGCTTGACGCCGAGATGCTGACATGCAGGAAGCAAGGACGCCACCGCTATTACAGGCTCAAAAACGGAAAGATTGCA
CAATCGCTGGAGACCCTGCTTAACATAGCGCCCCCTGCGGAAATTCGCTCTTTCCGGCAGTCAGCTGAAGATCGGGCGGT
CAGAAAAGCGCGCACATGCTATGATCACCTGGCTGGATCGCTCGGCGTCACACTTGCGGATCGGCTCGTGGAGATGGGCG
TATTGAAAGAAGAAGAGACGGCTTTTACAGTGACTGAAGAAGGGGAAGCATTTTTGAAAGAGCTTGGCATCGATGTCAGG
GAAGTCAAAAAGAAACGGCGCTCTTTTTGCCATAAATGCCTGGATTGGAGTGAAAGACGGCATCACATTGCCGGCGCCTT
AGGCTCCGCATTGCTCGATGCCTTCATCCGCATGGGCTGGATCGAGCGGCGCCCGCATACACGGGCCGTTGCAGTCACGC
CCGCCGGCGCAAAGGAACTTTACCGCCTATTTCATATTTCCATTGAAAAGAACTGA

Upstream 100 bases:

>100_bases
GTTTTGTTCCATATGCGTCTCCTCCTTTTATGCTTTTATTGTAATTCTTCAATATTTCAATTAACATCGAAGTATCGATT
GCATTTTAGGAGGAAGTGTA

Downstream 100 bases:

>100_bases
AGAAATAGTTCTCGATCGTTTTCCGGCATTCCGGGAGACCAAATAGCATGCGGTTAGGAACCTGCGGCAAGCCGTTCACG
TCCTCGGCTTTCATGGAAAA

Product: YdfF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MNVNPNIAEVAKLVTDPSRAAILTALLDDRYYTATELAGYAGIKQQTASFHLSKLLDAEMLTCRKQGRHRYYRLKNGKIA
QSLETLLNIAPPAEIRSFRQSAEDRAVRKARTCYDHLAGSLGVTLADRLVEMGVLKEEETAFTVTEEGEAFLKELGIDVR
EVKKKRRSFCHKCLDWSERRHHIAGALGSALLDAFIRMGWIERRPHTRAVAVTPAGAKELYRLFHISIEKN

Sequences:

>Translated_231_residues
MNVNPNIAEVAKLVTDPSRAAILTALLDDRYYTATELAGYAGIKQQTASFHLSKLLDAEMLTCRKQGRHRYYRLKNGKIA
QSLETLLNIAPPAEIRSFRQSAEDRAVRKARTCYDHLAGSLGVTLADRLVEMGVLKEEETAFTVTEEGEAFLKELGIDVR
EVKKKRRSFCHKCLDWSERRHHIAGALGSALLDAFIRMGWIERRPHTRAVAVTPAGAKELYRLFHISIEKN
>Mature_231_residues
MNVNPNIAEVAKLVTDPSRAAILTALLDDRYYTATELAGYAGIKQQTASFHLSKLLDAEMLTCRKQGRHRYYRLKNGKIA
QSLETLLNIAPPAEIRSFRQSAEDRAVRKARTCYDHLAGSLGVTLADRLVEMGVLKEEETAFTVTEEGEAFLKELGIDVR
EVKKKRRSFCHKCLDWSERRHHIAGALGSALLDAFIRMGWIERRPHTRAVAVTPAGAKELYRLFHISIEKN

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 26063; Mature: 26063

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVNPNIAEVAKLVTDPSRAAILTALLDDRYYTATELAGYAGIKQQTASFHLSKLLDAEM
CCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTCRKQGRHRYYRLKNGKIAQSLETLLNIAPPAEIRSFRQSAEDRAVRKARTCYDHLAGS
HHHHHHCCHHEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVTLADRLVEMGVLKEEETAFTVTEEGEAFLKELGIDVREVKKKRRSFCHKCLDWSERR
HHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHH
HHIAGALGSALLDAFIRMGWIERRPHTRAVAVTPAGAKELYRLFHISIEKN
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNVNPNIAEVAKLVTDPSRAAILTALLDDRYYTATELAGYAGIKQQTASFHLSKLLDAEM
CCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTCRKQGRHRYYRLKNGKIAQSLETLLNIAPPAEIRSFRQSAEDRAVRKARTCYDHLAGS
HHHHHHCCHHEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVTLADRLVEMGVLKEEETAFTVTEEGEAFLKELGIDVREVKKKRRSFCHKCLDWSERR
HHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHH
HHIAGALGSALLDAFIRMGWIERRPHTRAVAVTPAGAKELYRLFHISIEKN
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]