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The map label for this gene is yvfE [H]

Identifier: 52787365

GI number: 52787365

Start: 3507893

End: 3509038

Strand: Reverse

Name: yvfE [H]

Synonym: BLi03681

Alternate gene names: 52787365

Gene position: 3509038-3507893 (Counterclockwise)

Preceding gene: 52787366

Following gene: 52787364

Centisome position: 83.1

GC content: 53.49

Gene sequence:

>1146_bases
ATGAGTCAGAATAAGCGAATTTATTTATCACCGCCGCACATGAGCGGAGACGAGGAGCGCTATGTAGCCGAAGCGTTTCG
GACAAACTGGATCGCGCCCCTCGGTCCCCTTGTCGACACATTTGAAGAAAAGCTTGCCGCCTATGCGGGGACGTCCGGAG
CCGCGGCAGTCAGCTCAGGAACAGCTGCGATCCACCTGGCCTTGAAATTGCTCGGCGTCGGCAAAGGCGATACGGTCTTC
TGCTCTTCTTTTACGTTTGTAGCGAGCGCCAATCCGATCATATATGAGCAGGCTGAACCGGTTTTCATTGATTCTGAACG
GGATACATGGAACATGTCGCCCGAGGCGCTTGAACGGGCGCTTGACGAAGCGGAGCGGGCCAGGAATCTCCCGAAAGCCG
TCATCGTCGTCAACTTGTACGGCCAAAGCGCGAAAATGGACGAGATTATGGCCATTTGCGATCGATTTGCCGTGCCTGTC
ATTGAAGATGCAGCCGAATCGCTCGGTTCTGTTTATAAAGGCAGAAAAAGCGGGACCTTCGGACGCTTCGGCATTTATTC
GTTCAACGGTAACAAAATCATCACCACATCGGGCGGAGGAATGCTGGTCAGCGATGATGAAGACGCGTTGAAGAAGGCGC
GCTTTTTAGCCACTCAGGCGCGCGAGCCAGCCATTCATTATCAGCACGAAAAAGCGGGCTACAATTACCGGATGAGCAAT
GTTCTGGCCGGAATCGGCATCGCACAGCTCGCCGTTCTGGATGACCGGGTACATGCCAGACGGGCGGTTTTCGAGCGCTA
TAAGGAGGCGCTTTCCGGTATCGAAGGTATAGAATTCATGCCTGAGGCCGGCATGTCAAACCGCTGGCTCACGACATTAA
CGTTAGACACAGCAAAGATTCAAACAACACCGGCGGACATCATCGAACAGCTCGCAAATGAAAACATTGAGGCCCGCCCG
TTATGGAAGCCTTTGCACAGACAGCCCCTTTTTAAAGGCGCGGCCTTTTATCCGCACGATGACCAGGGCTCTGTCTGCTG
CGACTTATTTCAGCGCGGGCTCTGCCTGCCGTCAGGATCAAGTATGACGCGAAAAGAGCAGGACCGGGTAATTCAAATCG
TTGCCGACCGGATTAAATATAAATGA

Upstream 100 bases:

>100_bases
GAGCGGGGGCAGCCGTGATTCACGACATTCCTGATAATTGCACCGCAGTCGGAGTCCCTGCAAGAATGATCAAATAACAG
CAGTAAAAAGGGTGAAAAAC

Downstream 100 bases:

>100_bases
GGTGCTAAACATGGCGATTACATATTCCATGGACAGCTTAAAGCATAAGCTGGCAGAAATTTTGGATGTCATTCCAAGGC
ATTCATCAGTCGTTTACTTG

Product: YvfE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MSQNKRIYLSPPHMSGDEERYVAEAFRTNWIAPLGPLVDTFEEKLAAYAGTSGAAAVSSGTAAIHLALKLLGVGKGDTVF
CSSFTFVASANPIIYEQAEPVFIDSERDTWNMSPEALERALDEAERARNLPKAVIVVNLYGQSAKMDEIMAICDRFAVPV
IEDAAESLGSVYKGRKSGTFGRFGIYSFNGNKIITTSGGGMLVSDDEDALKKARFLATQAREPAIHYQHEKAGYNYRMSN
VLAGIGIAQLAVLDDRVHARRAVFERYKEALSGIEGIEFMPEAGMSNRWLTTLTLDTAKIQTTPADIIEQLANENIEARP
LWKPLHRQPLFKGAAFYPHDDQGSVCCDLFQRGLCLPSGSSMTRKEQDRVIQIVADRIKYK

Sequences:

>Translated_381_residues
MSQNKRIYLSPPHMSGDEERYVAEAFRTNWIAPLGPLVDTFEEKLAAYAGTSGAAAVSSGTAAIHLALKLLGVGKGDTVF
CSSFTFVASANPIIYEQAEPVFIDSERDTWNMSPEALERALDEAERARNLPKAVIVVNLYGQSAKMDEIMAICDRFAVPV
IEDAAESLGSVYKGRKSGTFGRFGIYSFNGNKIITTSGGGMLVSDDEDALKKARFLATQAREPAIHYQHEKAGYNYRMSN
VLAGIGIAQLAVLDDRVHARRAVFERYKEALSGIEGIEFMPEAGMSNRWLTTLTLDTAKIQTTPADIIEQLANENIEARP
LWKPLHRQPLFKGAAFYPHDDQGSVCCDLFQRGLCLPSGSSMTRKEQDRVIQIVADRIKYK
>Mature_380_residues
SQNKRIYLSPPHMSGDEERYVAEAFRTNWIAPLGPLVDTFEEKLAAYAGTSGAAAVSSGTAAIHLALKLLGVGKGDTVFC
SSFTFVASANPIIYEQAEPVFIDSERDTWNMSPEALERALDEAERARNLPKAVIVVNLYGQSAKMDEIMAICDRFAVPVI
EDAAESLGSVYKGRKSGTFGRFGIYSFNGNKIITTSGGGMLVSDDEDALKKARFLATQAREPAIHYQHEKAGYNYRMSNV
LAGIGIAQLAVLDDRVHARRAVFERYKEALSGIEGIEFMPEAGMSNRWLTTLTLDTAKIQTTPADIIEQLANENIEARPL
WKPLHRQPLFKGAAFYPHDDQGSVCCDLFQRGLCLPSGSSMTRKEQDRVIQIVADRIKYK

Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=267, Percent_Identity=35.2059925093633, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI2367285, Length=336, Percent_Identity=27.6785714285714, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR002129
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42012; Mature: 41881

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNKRIYLSPPHMSGDEERYVAEAFRTNWIAPLGPLVDTFEEKLAAYAGTSGAAAVSSG
CCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCC
TAAIHLALKLLGVGKGDTVFCSSFTFVASANPIIYEQAEPVFIDSERDTWNMSPEALERA
HHHHHHHHHHHCCCCCCEEEEECEEEEECCCCEEEECCCCEEEECCCCCCCCCHHHHHHH
LDEAERARNLPKAVIVVNLYGQSAKMDEIMAICDRFAVPVIEDAAESLGSVYKGRKSGTF
HHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
GRFGIYSFNGNKIITTSGGGMLVSDDEDALKKARFLATQAREPAIHYQHEKAGYNYRMSN
CCEEEEEECCCEEEEECCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEHHHCCCCEEHHH
VLAGIGIAQLAVLDDRVHARRAVFERYKEALSGIEGIEFMPEAGMSNRWLTTLTLDTAKI
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEEEEEECCEE
QTTPADIIEQLANENIEARPLWKPLHRQPLFKGAAFYPHDDQGSVCCDLFQRGLCLPSGS
ECCHHHHHHHHHCCCCCCCCCHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
SMTRKEQDRVIQIVADRIKYK
CCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQNKRIYLSPPHMSGDEERYVAEAFRTNWIAPLGPLVDTFEEKLAAYAGTSGAAAVSSG
CCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCC
TAAIHLALKLLGVGKGDTVFCSSFTFVASANPIIYEQAEPVFIDSERDTWNMSPEALERA
HHHHHHHHHHHCCCCCCEEEEECEEEEECCCCEEEECCCCEEEECCCCCCCCCHHHHHHH
LDEAERARNLPKAVIVVNLYGQSAKMDEIMAICDRFAVPVIEDAAESLGSVYKGRKSGTF
HHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
GRFGIYSFNGNKIITTSGGGMLVSDDEDALKKARFLATQAREPAIHYQHEKAGYNYRMSN
CCEEEEEECCCEEEEECCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEHHHCCCCEEHHH
VLAGIGIAQLAVLDDRVHARRAVFERYKEALSGIEGIEFMPEAGMSNRWLTTLTLDTAKI
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEEEEEECCEE
QTTPADIIEQLANENIEARPLWKPLHRQPLFKGAAFYPHDDQGSVCCDLFQRGLCLPSGS
ECCHHHHHHHHHCCCCCCCCCHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
SMTRKEQDRVIQIVADRIKYK
CCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969506; 9384377 [H]