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The map label for this gene is pksA [H]

Identifier: 52787124

GI number: 52787124

Start: 3275843

End: 3276427

Strand: Direct

Name: pksA [H]

Synonym: BLi03432

Alternate gene names: 52787124

Gene position: 3275843-3276427 (Clockwise)

Preceding gene: 52787115

Following gene: 52787128

Centisome position: 77.58

GC content: 45.13

Gene sequence:

>585_bases
ATGCCAAAAATAGTTGATCACGAAAAACAAAAAGAAAAAATTGCCGAAGCGGTGTGGAATGTGATTCACAGAGATGGACT
TGAACAATGCACCGTCAGAAATGTCGCTAAGGAAGCCGGACTTTCGGCCGGGTCGATGCGCCATTATTTTCCTCATCAGT
CTGAGCTTTTCATTTATTCAATGAGGCTTGTGGCAAACCGGGTCAAAACGCGTATCGAAAACATGACATTTAACGGTACA
CCGGCTGAAAACGTCAAACAGCTTCTTTTTCAGCTTATGCCTCTTGATGAAGAGCGAAAACTGGAAATGGAGGCATGGTA
TGCATTTACAGCCAAATCGCTCAGCGATCCGGAGCTCAAACCGTTGAGAAAGGAGATGAATGAAGGCATTTATTCAGCCT
GCAAATCGGCTGTTGAAATACTGGTAAAAACCGAAAAAAAGACCGGGATCGATGTTCTTAAGGAAACCGAGCATCTATAC
GCCCTTGTCGACGGGCTGGCGCTTCATTTGATCATGGCCCCTGAAAGGCTGACGGCTGAAAGGATCGATACTGTATTGGC
GGGTTATTTAAGATCGTTGGAATAG

Upstream 100 bases:

>100_bases
AACCAATCACCTTTTATCCGCCTCTCTTTTTTTAACACATTCGTACTAAAAAATTATAACACAGATGTATTAAATAATAC
ACCCGTGTTATAATGTGTGT

Downstream 100 bases:

>100_bases
GAACAGATCTATCGCATTGCACCAGAAGGAACTCACACAACCACAGAAAAGCAGGCCTCTCAGCCTGCTTTTCTGGATTT
AATGCTCTTGTTTTAAATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MPKIVDHEKQKEKIAEAVWNVIHRDGLEQCTVRNVAKEAGLSAGSMRHYFPHQSELFIYSMRLVANRVKTRIENMTFNGT
PAENVKQLLFQLMPLDEERKLEMEAWYAFTAKSLSDPELKPLRKEMNEGIYSACKSAVEILVKTEKKTGIDVLKETEHLY
ALVDGLALHLIMAPERLTAERIDTVLAGYLRSLE

Sequences:

>Translated_194_residues
MPKIVDHEKQKEKIAEAVWNVIHRDGLEQCTVRNVAKEAGLSAGSMRHYFPHQSELFIYSMRLVANRVKTRIENMTFNGT
PAENVKQLLFQLMPLDEERKLEMEAWYAFTAKSLSDPELKPLRKEMNEGIYSACKSAVEILVKTEKKTGIDVLKETEHLY
ALVDGLALHLIMAPERLTAERIDTVLAGYLRSLE
>Mature_193_residues
PKIVDHEKQKEKIAEAVWNVIHRDGLEQCTVRNVAKEAGLSAGSMRHYFPHQSELFIYSMRLVANRVKTRIENMTFNGTP
AENVKQLLFQLMPLDEERKLEMEAWYAFTAKSLSDPELKPLRKEMNEGIYSACKSAVEILVKTEKKTGIDVLKETEHLYA
LVDGLALHLIMAPERLTAERIDTVLAGYLRSLE

Specific function: Transcriptional regulation of the polyketide synthase operon [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22201; Mature: 22070

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKIVDHEKQKEKIAEAVWNVIHRDGLEQCTVRNVAKEAGLSAGSMRHYFPHQSELFIYS
CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHH
MRLVANRVKTRIENMTFNGTPAENVKQLLFQLMPLDEERKLEMEAWYAFTAKSLSDPELK
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHH
PLRKEMNEGIYSACKSAVEILVKTEKKTGIDVLKETEHLYALVDGLALHLIMAPERLTAE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RIDTVLAGYLRSLE
HHHHHHHHHHHHCC
>Mature Secondary Structure 
PKIVDHEKQKEKIAEAVWNVIHRDGLEQCTVRNVAKEAGLSAGSMRHYFPHQSELFIYS
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHH
MRLVANRVKTRIENMTFNGTPAENVKQLLFQLMPLDEERKLEMEAWYAFTAKSLSDPELK
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHH
PLRKEMNEGIYSACKSAVEILVKTEKKTGIDVLKETEHLYALVDGLALHLIMAPERLTAE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RIDTVLAGYLRSLE
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]