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The map label for this gene is yshB [H]

Identifier: 52786738

GI number: 52786738

Start: 2890637

End: 2891173

Strand: Reverse

Name: yshB [H]

Synonym: BLi03007

Alternate gene names: 52786738

Gene position: 2891173-2890637 (Counterclockwise)

Preceding gene: 52786739

Following gene: 52786737

Centisome position: 68.47

GC content: 45.81

Gene sequence:

>537_bases
ATGTTAGATATCATCATTATCATTTTGCTTTTGTCCGGTTTGTTTATTGGACTCAAAAGAGGGTTTATCCGCCAGTTTAT
CCGTTTGGTTACGTTTATCGCAGCGATCGCTGTGGCCGCAACCTATTACGGCGACCTTGCGCCTAAGCTCGGCTGGATTC
CGTCTCCCGACTTTACGGGCGGCCAGGCTGCGCTGGCGTTTGTAAACGGAAGCCTTGAAGGCGCTTATTACAATATGATT
GCGTTTTTGATTCTCTTTATCCTGACGATTATCCTTTTGAGAGTTGCCGCATCGTTTTTGGATGCCGTCGCAAGCATACC
GGTTCTCAAACAGATCAACCAAATACTCGGAGCCGTGCTCGGTTTTGCGGAAATCTATCTGTTCGTGTTTGTCGTTCTGT
TCATCGGAACGCTTCTGCCGATTGATGTCCTGCAAAGCATGATGGCCGGTTCAGTCATGGCTGATTTGATCATTCATAAA
ACACCGTTTTTATCAAACATGTTAAACAATCTGCTGCATCAGTACGGATCTTTGTAA

Upstream 100 bases:

>100_bases
CCGTTTTGACGGCTGTAAATGTGGTTCACGATTATTTGAAGCTTAAGGAAGAGCTTGAGAGATTAAAAGGACAAATAAAA
GAAAAGGATTGAACATCACG

Downstream 100 bases:

>100_bases
AAACTTCTCTGTTTGTAGGGAAGTTTTTTTTCGGGGCTCTTGAGAACCCCGGAAGCTGTCGGATATGCCTGTTTGTTGTA
GGATCAGCCAAAAATTTGTA

Product: YshB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MLDIIIIILLLSGLFIGLKRGFIRQFIRLVTFIAAIAVAATYYGDLAPKLGWIPSPDFTGGQAALAFVNGSLEGAYYNMI
AFLILFILTIILLRVAASFLDAVASIPVLKQINQILGAVLGFAEIYLFVFVVLFIGTLLPIDVLQSMMAGSVMADLIIHK
TPFLSNMLNNLLHQYGSL

Sequences:

>Translated_178_residues
MLDIIIIILLLSGLFIGLKRGFIRQFIRLVTFIAAIAVAATYYGDLAPKLGWIPSPDFTGGQAALAFVNGSLEGAYYNMI
AFLILFILTIILLRVAASFLDAVASIPVLKQINQILGAVLGFAEIYLFVFVVLFIGTLLPIDVLQSMMAGSVMADLIIHK
TPFLSNMLNNLLHQYGSL
>Mature_178_residues
MLDIIIIILLLSGLFIGLKRGFIRQFIRLVTFIAAIAVAATYYGDLAPKLGWIPSPDFTGGQAALAFVNGSLEGAYYNMI
AFLILFILTIILLRVAASFLDAVASIPVLKQINQILGAVLGFAEIYLFVFVVLFIGTLLPIDVLQSMMAGSVMADLIIHK
TPFLSNMLNNLLHQYGSL

Specific function: Unknown

COG id: COG1286

COG function: function code R; Uncharacterized membrane protein, required for colicin V production

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003825 [H]

Pfam domain/function: PF02674 Colicin_V [H]

EC number: NA

Molecular weight: Translated: 19381; Mature: 19381

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDIIIIILLLSGLFIGLKRGFIRQFIRLVTFIAAIAVAATYYGDLAPKLGWIPSPDFTG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GQAALAFVNGSLEGAYYNMIAFLILFILTIILLRVAASFLDAVASIPVLKQINQILGAVL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFAEIYLFVFVVLFIGTLLPIDVLQSMMAGSVMADLIIHKTPFLSNMLNNLLHQYGSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLDIIIIILLLSGLFIGLKRGFIRQFIRLVTFIAAIAVAATYYGDLAPKLGWIPSPDFTG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GQAALAFVNGSLEGAYYNMIAFLILFILTIILLRVAASFLDAVASIPVLKQINQILGAVL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFAEIYLFVFVVLFIGTLLPIDVLQSMMAGSVMADLIIHKTPFLSNMLNNLLHQYGSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]