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The map label for this gene is yshC [H]

Identifier: 52786737

GI number: 52786737

Start: 2888778

End: 2890493

Strand: Reverse

Name: yshC [H]

Synonym: BLi03006

Alternate gene names: 52786737

Gene position: 2890493-2888778 (Counterclockwise)

Preceding gene: 52786738

Following gene: 52786736

Centisome position: 68.45

GC content: 49.88

Gene sequence:

>1716_bases
ATGCATAAAAAAGATATCATCAAATTGCTTGAAACGATTGCGATATATATGGAACTAAAAGGGGACAACCCGTTTAAAAT
CTCCGCTTTCAGAAAGGCTGCGGCAGCTCTTGAACAAGACGACCGGAGCCTCTCGGAAATCGATGATATGACGTCCCTGT
CCGGGATCGGCAAAGGCACATACGCTGTCATCAAGGAATATATGGACACGGGAGCATCCGGAACGCTGGAACGATTAAAG
GAAGAGGTTCCGGAAGGACTTGTCCCGCTTTTGAAGCTTCCGGGTCTCGGCGGCAAAAAAATCGCCAAGCTGTATCAGGA
GCTCGGCGTCTGTGATGCGGCATCTTTAAAAGAGGCCTGCGAACAGCAAAAGGTTCAGGGGCTTGCCGGATTCGGCAAAA
AGACGGAGGAAAAAATCCTGCAGGCTTTGGGTGAAGCGGGAAAACGCCCTGAACGGTACCCGATCGCGGTCGCTTTGGCC
GTCGCTGACATCATCGAAGAGCAGCTTGAAGGGCTCCCGGGCCTCATTAAGTTTTCACGGGCCGGAAGCCTGCGCCGCGC
CAAAGAAACGGTGAAAGACCTCGATTACATTATGGCTGTCACTGATCCGGAACTTGTCCGGGAAGGGCTCTTAAAGCTTT
CGAACATCAAGGAGGTCATTGCCGCAGGAGATACGAAAGTGTCTCTCACATTTGCGTTTGAATACGAAATCAGTGCGGAT
TTCCGGCTGGTGACAGAGGAACAGTTCCCAACGACGCTTCATCATTTTACCGGATCAAAAGACCACAATATCAAAATGCG
CCAGCTTGCCAAAGAAAAAGGCGAAAGAATCAGTGAATACGGCGTCGAAACCGTTGAAACTGGAGAAATTAAAACTTTCT
CAAGCGAAAAAGAGTTTTTCGCCCATTTCGGGCTTCCGTTTATTCCGCCCGAACTGCGGGAGACAGGAAGAGAAGTCGAG
GACTACAGCGTTGACATCGGACTCGTTTCCGCCGAGGATATTCAAGGAGACCTTCACATGCACTCGGCTTGGAGCGACGG
TGCTTTTTCGATCAGGGAAATGGCGGAAGCATGCATGGCAAAAGGGTACCGCTATATGGCGATCACAGACCATTCCCAAT
ATTTAAAAGTCGCAGGCGGTTTGACGCCTGAGCGCCTTCGCATGCAGGCGAAGGAAATTGATGAACTGAATAAGGAATTT
ACCGATTTTCATATTTTTAAAGGCGTGGAAATGGACATCCTGCCTGACGGAACACTGGATTATGACGACGAGCTGCTGGC
GGAAATGGATCTTGTCATTGCTTCCATCCATTCAAGCTTTTCACAGCCGCAGCATGTCATCATGAAGCGGCTTGAAACCG
CGCTGCTGAATCAGCACGTTGACATTATCGCTCATCCGACCGGCCGTCTGATCGGAAGAAGGGCGGGGTATGAAGTCGAT
ATTGACCAGCTGATCGAACTTGCGAAAAAAACGAATACAGCATTGGAGCTGAACGCAAATCCAGCGCGGCTCGATCTCAG
AATGGAGCACTTGATCAAAGCGAATGCTGCCGGAGTGACACTCGTTATTAATACGGATGCCCACAACACAGCGATGCTTG
ATGATATGAAAACGGGCGTTACGGCAGCGAGAAAAGGATGGACGCCAAAGGCCAATGTATTAAACACCCGCTCCTTTGAA
GAAGTCCAGGCATTTTTGTCGCGCCATCGATCTTAA

Upstream 100 bases:

>100_bases
GAACCCCGGAAGCTGTCGGATATGCCTGTTTGTTGTAGGATCAGCCAAAAATTTGTATGATTGAAGCAGGATGAACGAGG
GGAAACAAGAGGTGAACAAC

Downstream 100 bases:

>100_bases
GGAGGTTTAATGGACGTTGCAGCAAAAAGCGCTATCAGCACTTGAATTTCATAAAGTAAAAGAACAGCTCACAGAGCATG
CGGCATCTTCTTTGGGGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: DNA polymerase type-X; 3'-5' exodeoxyribonuclease; 3'-5' exonuclease [H]

Number of amino acids: Translated: 571; Mature: 571

Protein sequence:

>571_residues
MHKKDIIKLLETIAIYMELKGDNPFKISAFRKAAAALEQDDRSLSEIDDMTSLSGIGKGTYAVIKEYMDTGASGTLERLK
EEVPEGLVPLLKLPGLGGKKIAKLYQELGVCDAASLKEACEQQKVQGLAGFGKKTEEKILQALGEAGKRPERYPIAVALA
VADIIEEQLEGLPGLIKFSRAGSLRRAKETVKDLDYIMAVTDPELVREGLLKLSNIKEVIAAGDTKVSLTFAFEYEISAD
FRLVTEEQFPTTLHHFTGSKDHNIKMRQLAKEKGERISEYGVETVETGEIKTFSSEKEFFAHFGLPFIPPELRETGREVE
DYSVDIGLVSAEDIQGDLHMHSAWSDGAFSIREMAEACMAKGYRYMAITDHSQYLKVAGGLTPERLRMQAKEIDELNKEF
TDFHIFKGVEMDILPDGTLDYDDELLAEMDLVIASIHSSFSQPQHVIMKRLETALLNQHVDIIAHPTGRLIGRRAGYEVD
IDQLIELAKKTNTALELNANPARLDLRMEHLIKANAAGVTLVINTDAHNTAMLDDMKTGVTAARKGWTPKANVLNTRSFE
EVQAFLSRHRS

Sequences:

>Translated_571_residues
MHKKDIIKLLETIAIYMELKGDNPFKISAFRKAAAALEQDDRSLSEIDDMTSLSGIGKGTYAVIKEYMDTGASGTLERLK
EEVPEGLVPLLKLPGLGGKKIAKLYQELGVCDAASLKEACEQQKVQGLAGFGKKTEEKILQALGEAGKRPERYPIAVALA
VADIIEEQLEGLPGLIKFSRAGSLRRAKETVKDLDYIMAVTDPELVREGLLKLSNIKEVIAAGDTKVSLTFAFEYEISAD
FRLVTEEQFPTTLHHFTGSKDHNIKMRQLAKEKGERISEYGVETVETGEIKTFSSEKEFFAHFGLPFIPPELRETGREVE
DYSVDIGLVSAEDIQGDLHMHSAWSDGAFSIREMAEACMAKGYRYMAITDHSQYLKVAGGLTPERLRMQAKEIDELNKEF
TDFHIFKGVEMDILPDGTLDYDDELLAEMDLVIASIHSSFSQPQHVIMKRLETALLNQHVDIIAHPTGRLIGRRAGYEVD
IDQLIELAKKTNTALELNANPARLDLRMEHLIKANAAGVTLVINTDAHNTAMLDDMKTGVTAARKGWTPKANVLNTRSFE
EVQAFLSRHRS
>Mature_571_residues
MHKKDIIKLLETIAIYMELKGDNPFKISAFRKAAAALEQDDRSLSEIDDMTSLSGIGKGTYAVIKEYMDTGASGTLERLK
EEVPEGLVPLLKLPGLGGKKIAKLYQELGVCDAASLKEACEQQKVQGLAGFGKKTEEKILQALGEAGKRPERYPIAVALA
VADIIEEQLEGLPGLIKFSRAGSLRRAKETVKDLDYIMAVTDPELVREGLLKLSNIKEVIAAGDTKVSLTFAFEYEISAD
FRLVTEEQFPTTLHHFTGSKDHNIKMRQLAKEKGERISEYGVETVETGEIKTFSSEKEFFAHFGLPFIPPELRETGREVE
DYSVDIGLVSAEDIQGDLHMHSAWSDGAFSIREMAEACMAKGYRYMAITDHSQYLKVAGGLTPERLRMQAKEIDELNKEF
TDFHIFKGVEMDILPDGTLDYDDELLAEMDLVIASIHSSFSQPQHVIMKRLETALLNQHVDIIAHPTGRLIGRRAGYEVD
IDQLIELAKKTNTALELNANPARLDLRMEHLIKANAAGVTLVINTDAHNTAMLDDMKTGVTAARKGWTPKANVLNTRSFE
EVQAFLSRHRS

Specific function: Strictly DNA-template-directed DNA polymerase, preferentially acting on DNA structures containing gaps from one to a few nucleotides and bearing a phosphate group at the 5' end of the downstream DNA. The fact that PolX is able to conduct filling of a sing

COG id: COG1796

COG function: function code L; DNA polymerase IV (family X)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the PHP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002054
- InterPro:   IPR010996
- InterPro:   IPR003583
- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195
- InterPro:   IPR022311 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 63469; Mature: 63469

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKKDIIKLLETIAIYMELKGDNPFKISAFRKAAAALEQDDRSLSEIDDMTSLSGIGKGT
CCHHHHHHHHHHHHHHEEECCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHH
YAVIKEYMDTGASGTLERLKEEVPEGLVPLLKLPGLGGKKIAKLYQELGVCDAASLKEAC
HHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
EQQKVQGLAGFGKKTEEKILQALGEAGKRPERYPIAVALAVADIIEEQLEGLPGLIKFSR
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC
AGSLRRAKETVKDLDYIMAVTDPELVREGLLKLSNIKEVIAAGDTKVSLTFAFEYEISAD
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCC
FRLVTEEQFPTTLHHFTGSKDHNIKMRQLAKEKGERISEYGVETVETGEIKTFSSEKEFF
EEEEECCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEECCCHHHHH
AHFGLPFIPPELRETGREVEDYSVDIGLVSAEDIQGDLHMHSAWSDGAFSIREMAEACMA
HHCCCCCCCHHHHHCCCCHHHCEEEEEEEEHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
KGYRYMAITDHSQYLKVAGGLTPERLRMQAKEIDELNKEFTDFHIFKGVEMDILPDGTLD
CCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
YDDELLAEMDLVIASIHSSFSQPQHVIMKRLETALLNQHVDIIAHPTGRLIGRRAGYEVD
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCC
IDQLIELAKKTNTALELNANPARLDLRMEHLIKANAAGVTLVINTDAHNTAMLDDMKTGV
HHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHH
TAARKGWTPKANVLNTRSFEEVQAFLSRHRS
HHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MHKKDIIKLLETIAIYMELKGDNPFKISAFRKAAAALEQDDRSLSEIDDMTSLSGIGKGT
CCHHHHHHHHHHHHHHEEECCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHH
YAVIKEYMDTGASGTLERLKEEVPEGLVPLLKLPGLGGKKIAKLYQELGVCDAASLKEAC
HHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
EQQKVQGLAGFGKKTEEKILQALGEAGKRPERYPIAVALAVADIIEEQLEGLPGLIKFSR
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC
AGSLRRAKETVKDLDYIMAVTDPELVREGLLKLSNIKEVIAAGDTKVSLTFAFEYEISAD
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCC
FRLVTEEQFPTTLHHFTGSKDHNIKMRQLAKEKGERISEYGVETVETGEIKTFSSEKEFF
EEEEECCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEECCCHHHHH
AHFGLPFIPPELRETGREVEDYSVDIGLVSAEDIQGDLHMHSAWSDGAFSIREMAEACMA
HHCCCCCCCHHHHHCCCCHHHCEEEEEEEEHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
KGYRYMAITDHSQYLKVAGGLTPERLRMQAKEIDELNKEFTDFHIFKGVEMDILPDGTLD
CCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
YDDELLAEMDLVIASIHSSFSQPQHVIMKRLETALLNQHVDIIAHPTGRLIGRRAGYEVD
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCC
IDQLIELAKKTNTALELNANPARLDLRMEHLIKANAAGVTLVINTDAHNTAMLDDMKTGV
HHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHH
TAARKGWTPKANVLNTRSFEEVQAFLSRHRS
HHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]