Click here to switch to the map view.

The map label for this gene is ypuH

Identifier: 52786206

GI number: 52786206

Start: 2402800

End: 2403393

Strand: Reverse

Name: ypuH

Synonym: BLi02467

Alternate gene names: 52786206

Gene position: 2403393-2402800 (Counterclockwise)

Preceding gene: 52786207

Following gene: 52786205

Centisome position: 56.92

GC content: 48.32

Gene sequence:

>594_bases
ATGACGCTTGATATCGTGAATTGGAAAGCCATTGTCGAAGCGCTTTTGTATGCCGCCGGCGACGAGGGCCTGACAAAAAA
ACAGCTATTATCCGTTTTGGAGGTCGATGAAGCCGAGCTGCTGGATATTATGCTTGATGTCAAAGAAACCTATGAAAAAG
AAGACAGGGGCATCGAGCTTGTCGAGTATGCGGATACGTACATGCTTTCGACCAAAAAAGAATTCGCCGTCTATTTGAAA
AAGCTGATCGAAGCCCCTTCAAAAGGGCTTTCTCAGGCTGCGCTCGAGGTTTTGGCCATCGTCTCTTATAAGCAGCCGAT
CACGAGAGCGGAAGTTGAGGAGATCAGAGGGGTCAAATCTGAACGGATTCTTCAGAGCCTGGTCGCAAAAGCGCTGTTAT
GCGAAGTCGGACGGGCGGATGGACCGGGCAGGGCGATCTTGTACGGTACAACAGAAACATTTCTGGAACAATTCGGCTTA
AAAACGCTTGAAGAGCTTCCGCCGCTGCCCGAAAATGTAGAAGAAGACGGGGTTCAGGAAGAAGCCGATCTGTTCTTCGA
AAACTTTAACCAGACGTTCGAAGATTTAAAATAG

Upstream 100 bases:

>100_bases
ACGTTTTTGGCGATTTTGGAGCTGATGAAAAACCAGCTGATCATCATTGAACAGGAACACAACTTTTCAGATATTTACAT
AACAGGGAGTGAAGCGATTC

Downstream 100 bases:

>100_bases
ATTCACCTTAAGGATCGAAGTATGATAATATATATTATCGTATTTTTTATGTTTAATTTCATTCATGAAAGAATACGATT
GTAACAAAGCGATGAGGAGA

Product: YpuH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MTLDIVNWKAIVEALLYAAGDEGLTKKQLLSVLEVDEAELLDIMLDVKETYEKEDRGIELVEYADTYMLSTKKEFAVYLK
KLIEAPSKGLSQAALEVLAIVSYKQPITRAEVEEIRGVKSERILQSLVAKALLCEVGRADGPGRAILYGTTETFLEQFGL
KTLEELPPLPENVEEDGVQEEADLFFENFNQTFEDLK

Sequences:

>Translated_197_residues
MTLDIVNWKAIVEALLYAAGDEGLTKKQLLSVLEVDEAELLDIMLDVKETYEKEDRGIELVEYADTYMLSTKKEFAVYLK
KLIEAPSKGLSQAALEVLAIVSYKQPITRAEVEEIRGVKSERILQSLVAKALLCEVGRADGPGRAILYGTTETFLEQFGL
KTLEELPPLPENVEEDGVQEEADLFFENFNQTFEDLK
>Mature_196_residues
TLDIVNWKAIVEALLYAAGDEGLTKKQLLSVLEVDEAELLDIMLDVKETYEKEDRGIELVEYADTYMLSTKKEFAVYLKK
LIEAPSKGLSQAALEVLAIVSYKQPITRAEVEEIRGVKSERILQSLVAKALLCEVGRADGPGRAILYGTTETFLEQFGLK
TLEELPPLPENVEEDGVQEEADLFFENFNQTFEDLK

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPB_BACLD (Q65HX2)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_079626.1
- RefSeq:   YP_092035.1
- ProteinModelPortal:   Q65HX2
- SMR:   Q65HX2
- STRING:   Q65HX2
- EnsemblBacteria:   EBBACT00000056320
- EnsemblBacteria:   EBBACT00000062299
- GeneID:   3028826
- GeneID:   3101103
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi02467
- KEGG:   bli:BL01885
- NMPDR:   fig|279010.5.peg.313
- eggNOG:   COG1386
- GeneTree:   EBGT00050000002500
- HOGENOM:   HBG752450
- OMA:   TYKLTTS
- ProtClustDB:   CLSK887513
- BioCyc:   BLIC279010-1:BLI02467-MONOMER
- BioCyc:   BLIC279010:BL01885-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01804
- InterPro:   IPR005234
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF019345
- TIGRFAMs:   TIGR00281

Pfam domain/function: PF04079 DUF387

EC number: NA

Molecular weight: Translated: 22138; Mature: 22006

Theoretical pI: Translated: 4.10; Mature: 4.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDIVNWKAIVEALLYAAGDEGLTKKQLLSVLEVDEAELLDIMLDVKETYEKEDRGIEL
CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHH
VEYADTYMLSTKKEFAVYLKKLIEAPSKGLSQAALEVLAIVSYKQPITRAEVEEIRGVKS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHH
ERILQSLVAKALLCEVGRADGPGRAILYGTTETFLEQFGLKTLEELPPLPENVEEDGVQE
HHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHCHHHHHHCCCCCCCCCCCCCHH
EADLFFENFNQTFEDLK
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TLDIVNWKAIVEALLYAAGDEGLTKKQLLSVLEVDEAELLDIMLDVKETYEKEDRGIEL
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHH
VEYADTYMLSTKKEFAVYLKKLIEAPSKGLSQAALEVLAIVSYKQPITRAEVEEIRGVKS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHH
ERILQSLVAKALLCEVGRADGPGRAILYGTTETFLEQFGLKTLEELPPLPENVEEDGVQE
HHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHCHHHHHHCCCCCCCCCCCCCHH
EADLFFENFNQTFEDLK
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA