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The map label for this gene is mtrB [H]

Identifier: 52786156

GI number: 52786156

Start: 2355165

End: 2355401

Strand: Reverse

Name: mtrB [H]

Synonym: BLi02412

Alternate gene names: 52786156

Gene position: 2355401-2355165 (Counterclockwise)

Preceding gene: 52786157

Following gene: 52786155

Centisome position: 55.78

GC content: 46.84

Gene sequence:

>237_bases
ATGAACATGACCAATAATCAATCGAATGATTTTGTCGTTATCAAAGCCGTTGAAGACGGCGTCAATGTGATCGGACTGAC
AAGGGGGACGGACACGAGATTTCATCATTCAGAAAAGCTTGATAAAGGAGAAGTGATGATCTGCCAGTTTACCGAGCATA
CCTCCGCGATCAAGGTCCGGGGCGAGGCCCTTATTCAGACGGCAAACGGCGAGATGAAGAGCGAATCGAAAAAATAG

Upstream 100 bases:

>100_bases
CACTTCAGCTGTAAGGGGAACGTTTAGACAGGATGTGGCTGCTCGCTCTGAGGTGTTGGAGCTTATCAAAACATCATGAT
TAAAAATGAGAAGGTGTGCG

Downstream 100 bases:

>100_bases
CAGGCTGGCTTTTTATGCCCGTCCGCGTGGCATAAGACAATATCTTTCAACATATTATGGTATAATTAAACTTTCTCCGC
TCAAAAAAGATACATAATCA

Product: transcription attenuation protein MtrB

Products: NA

Alternate protein names: Trp RNA-binding attenuation protein; TRAP; Tryptophan RNA-binding attenuator protein [H]

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MNMTNNQSNDFVVIKAVEDGVNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVRGEALIQTANGEMKSESKK

Sequences:

>Translated_78_residues
MNMTNNQSNDFVVIKAVEDGVNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVRGEALIQTANGEMKSESKK
>Mature_78_residues
MNMTNNQSNDFVVIKAVEDGVNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVRGEALIQTANGEMKSESKK

Specific function: Required for transcription attenuation control in the Trp operon. This trans-acting factor seems to recognize a 10 bases nucleotide sequence in the Trp leader transcript causing transcription termination. Binds the leader RNA only in presence of L-tryptop

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mtrB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000824
- InterPro:   IPR016031 [H]

Pfam domain/function: PF02081 TrpBP [H]

EC number: NA

Molecular weight: Translated: 8667; Mature: 8667

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMTNNQSNDFVVIKAVEDGVNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVR
CCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
GEALIQTANGEMKSESKK
CEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MNMTNNQSNDFVVIKAVEDGVNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVR
CCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
GEALIQTANGEMKSESKK
CEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA