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The map label for this gene is yocS [H]

Identifier: 52786002

GI number: 52786002

Start: 2215040

End: 2216020

Strand: Direct

Name: yocS [H]

Synonym: BLi02258

Alternate gene names: 52786002

Gene position: 2215040-2216020 (Clockwise)

Preceding gene: 52786000

Following gene: 52786009

Centisome position: 52.46

GC content: 48.62

Gene sequence:

>981_bases
ATGAGTTATTTGATCAAAATCAGTCAATTTGCAGGAAAAACGTTCGCCATTTGGGTGATTCTATTTGCGATTCTCGGCTT
TGCCTTTCCGTCGCAGTTCACTTGGATCGTCCCTTATATTACGATTCTGCTTGGCGTGATTATGTTTGGCATGGGATTGA
CATTGTCAGCGGACGATTTTAAAGAGCTGCTGAGACGTCCCCTGCATGTGCTGATCGGTGTGCTGATTCAATATACGGTG
ATGCCGTTGCTCGCTTTTGGACTGGCCTATGGACTCGCTCTCCCCCCCGAAATAGCAGTGGGGGTTATATTAGTGGGATG
CTGCCCCGGGGGAACAGCATCAAACGTCATGACATTTCTGGCAAAGGGGAATATCGCCCTGTCTGTGGCGATCACAACGC
TTTCCACACTGCTTGCCCCTTTTTTAACGCCGTTTCTCATTTTATTTTTCGCGAAGGAATGGCTTCCGGTATCTCCGGGC
TCTCTGTTCGTGTCGATTTTACAGGCGGTGCTGCTCCCGATTATCGCCGGGCTGATCGTTCAATTTTTCTTTAAAAAACA
AGTGAAAAAAGCTGTACAGGTGCTCCCGCTTGTCTCCGTTCTCGGCATCGTCGCCATCGTCTCCGCAGTCGTCGGAGGCA
ATCGGGAAAACATTATTCAATCAGGGCTGCTGATTTTTGCGGTAGTTGTTCTTCATAATGGCCTCGGACTTTTCCTCGGC
TTTGTTTTGGCAAAGTGCTTTAAAATGGATTATGCGTCGCAAAAAGCCGTGTCCATTGAGGTCGGCATGCAGAATTCGGG
TCTCGGCGCGGCATTGGCGACGGCGCACTTCTCCCCGCTTTCAGCTGTTCCGAGCGCTGTGTTCAGCGTCTGGCATAATC
TTTCAGGTTCATGGCTTGCGACATACTGGGCCAAAAAAACAAATAAACAGAAGAATGACAATCATTCTCCTGCCCCGCAA
ATGATAAATAAAAAGCTTTGA

Upstream 100 bases:

>100_bases
TATGTTAAATAATTCTTTATTTTACTAGTATTGAATTATTCAGAATATTAATTATAATAAGAGAATGTTACATTTTCTAC
AGATGTGAGGAGCTGGACTT

Downstream 100 bases:

>100_bases
CCGTACTTACGGCCAAAGCTTTTTTATGATTAACCTTCCAACAGAAGCTGTTCAGGATCTTCAAGCAGATTTTTAATCGT
AACCAGGAAGCCGACCGCTT

Product: YocS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MSYLIKISQFAGKTFAIWVILFAILGFAFPSQFTWIVPYITILLGVIMFGMGLTLSADDFKELLRRPLHVLIGVLIQYTV
MPLLAFGLAYGLALPPEIAVGVILVGCCPGGTASNVMTFLAKGNIALSVAITTLSTLLAPFLTPFLILFFAKEWLPVSPG
SLFVSILQAVLLPIIAGLIVQFFFKKQVKKAVQVLPLVSVLGIVAIVSAVVGGNRENIIQSGLLIFAVVVLHNGLGLFLG
FVLAKCFKMDYASQKAVSIEVGMQNSGLGAALATAHFSPLSAVPSAVFSVWHNLSGSWLATYWAKKTNKQKNDNHSPAPQ
MINKKL

Sequences:

>Translated_326_residues
MSYLIKISQFAGKTFAIWVILFAILGFAFPSQFTWIVPYITILLGVIMFGMGLTLSADDFKELLRRPLHVLIGVLIQYTV
MPLLAFGLAYGLALPPEIAVGVILVGCCPGGTASNVMTFLAKGNIALSVAITTLSTLLAPFLTPFLILFFAKEWLPVSPG
SLFVSILQAVLLPIIAGLIVQFFFKKQVKKAVQVLPLVSVLGIVAIVSAVVGGNRENIIQSGLLIFAVVVLHNGLGLFLG
FVLAKCFKMDYASQKAVSIEVGMQNSGLGAALATAHFSPLSAVPSAVFSVWHNLSGSWLATYWAKKTNKQKNDNHSPAPQ
MINKKL
>Mature_325_residues
SYLIKISQFAGKTFAIWVILFAILGFAFPSQFTWIVPYITILLGVIMFGMGLTLSADDFKELLRRPLHVLIGVLIQYTVM
PLLAFGLAYGLALPPEIAVGVILVGCCPGGTASNVMTFLAKGNIALSVAITTLSTLLAPFLTPFLILFFAKEWLPVSPGS
LFVSILQAVLLPIIAGLIVQFFFKKQVKKAVQVLPLVSVLGIVAIVSAVVGGNRENIIQSGLLIFAVVVLHNGLGLFLGF
VLAKCFKMDYASQKAVSIEVGMQNSGLGAALATAHFSPLSAVPSAVFSVWHNLSGSWLATYWAKKTNKQKNDNHSPAPQM
INKKL

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=250, Percent_Identity=35.2, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI37537552, Length=230, Percent_Identity=27.3913043478261, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI4506971, Length=282, Percent_Identity=28.3687943262411, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI24308414, Length=243, Percent_Identity=30.0411522633745, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI215422368, Length=233, Percent_Identity=31.3304721030043, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI215422370, Length=233, Percent_Identity=31.3304721030043, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI9790143, Length=233, Percent_Identity=31.3304721030043, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI58219066, Length=238, Percent_Identity=29.8319327731092, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115533076, Length=124, Percent_Identity=33.0645161290323, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 35023; Mature: 34891

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYLIKISQFAGKTFAIWVILFAILGFAFPSQFTWIVPYITILLGVIMFGMGLTLSADDF
CCCEEEHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
KELLRRPLHVLIGVLIQYTVMPLLAFGLAYGLALPPEIAVGVILVGCCPGGTASNVMTFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEECCCCCCHHHHHHHH
AKGNIALSVAITTLSTLLAPFLTPFLILFFAKEWLPVSPGSLFVSILQAVLLPIIAGLIV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
QFFFKKQVKKAVQVLPLVSVLGIVAIVSAVVGGNRENIIQSGLLIFAVVVLHNGLGLFLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
FVLAKCFKMDYASQKAVSIEVGMQNSGLGAALATAHFSPLSAVPSAVFSVWHNLSGSWLA
HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHH
TYWAKKTNKQKNDNHSPAPQMINKKL
HHHHHHCCCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
SYLIKISQFAGKTFAIWVILFAILGFAFPSQFTWIVPYITILLGVIMFGMGLTLSADDF
CCEEEHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH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HHHHHHCCCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]