Click here to switch to the map view.

The map label for this gene is sodF [H]

Identifier: 52785999

GI number: 52785999

Start: 2211277

End: 2212122

Strand: Direct

Name: sodF [H]

Synonym: BLi02254

Alternate gene names: 52785999

Gene position: 2211277-2212122 (Clockwise)

Preceding gene: 52785998

Following gene: 52786000

Centisome position: 52.37

GC content: 48.23

Gene sequence:

>846_bases
TTGAACAGAGATGCTTACAAAGAAAAAATATCGTCATGGGCCAAAGACCTGAAAGACCAGATGAAAGATGATCCTTCTTT
AGAAAGCCATTTAGAAAAACTTTTTCAATCATTGGATGATCCTCGTGCGACCGAACAGGAATGGTATGAGCAGGCAGAAG
CCGTGTATCAAGCCATCTCCCGCAGTGATGCGTCTCAAGCAGGCCGGCAGCCATTCAGAACAGTGCCGATCGGAGGCCAT
CGCCTGCCAAGCCTGCCCTACTCGTATTCAGCCCTTGAGCCCTATATTTCAAAAGAAATTATGTTTCTTCATCATACAAA
ACATCACCAAAGCTATGTCGACGGTTTGAACAGAGCTGAAAAAGAACTGCAGAAAGCGAGGCAAACCAAACAGTTTGACC
TCGTTAACCATTGGGAAAGAGAGCTCGCCTTCCACGGAGCCGGGCACTATTTGCATACGATATTTTGGTACGCGATGCAC
CCAAAAGGAAAAAGACGGCCGACAGGCGAATTGCTGGAGATGATCAACCGTTCATTCGGCAGCTATTCGGCCTTTAAAGA
ACACTTTTCCGAAGCGGCGAAAAAAGTGGAAGGCGTCGGCTGGGCGATCCTCGTCTGGGCGCCGCGTTCGCACCGCTTGG
AAATTCTGATCGCAGAAAAACATCAGCTGATGAGCCAATGGGATGTGATCCCCCTGCTCCCGCTCGATGTATGGGAGCAC
GCATATTACCTTCAATATAAAAATGAAAAGGCAAAATACGTCGATAATTGGTGGAATGTCGTTGACTGGAGAGAGCCTGA
AAGGCGATTTGCGTCAGCAAAGCGCGTTTTATGGGAGCCGTTCTGA

Upstream 100 bases:

>100_bases
TGCCGAACCAATTCTACATCCGCTATCACAGTTATCCTTTTGTGTTTTCATTGCTCGCTTCAAGCGCATTTATTAAAAAA
GCGGAAATGAGGGAGACATA

Downstream 100 bases:

>100_bases
TTCAAATTCGCTGGCGGGACTTCAATAGTTGAAGTCCTGTTTGCGTTTCGGCAGATCATGCCCATTTGCTGCGCCGGACA
TTGGCCTGATGTCGCCGAAA

Product: SodF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MNRDAYKEKISSWAKDLKDQMKDDPSLESHLEKLFQSLDDPRATEQEWYEQAEAVYQAISRSDASQAGRQPFRTVPIGGH
RLPSLPYSYSALEPYISKEIMFLHHTKHHQSYVDGLNRAEKELQKARQTKQFDLVNHWERELAFHGAGHYLHTIFWYAMH
PKGKRRPTGELLEMINRSFGSYSAFKEHFSEAAKKVEGVGWAILVWAPRSHRLEILIAEKHQLMSQWDVIPLLPLDVWEH
AYYLQYKNEKAKYVDNWWNVVDWREPERRFASAKRVLWEPF

Sequences:

>Translated_281_residues
MNRDAYKEKISSWAKDLKDQMKDDPSLESHLEKLFQSLDDPRATEQEWYEQAEAVYQAISRSDASQAGRQPFRTVPIGGH
RLPSLPYSYSALEPYISKEIMFLHHTKHHQSYVDGLNRAEKELQKARQTKQFDLVNHWERELAFHGAGHYLHTIFWYAMH
PKGKRRPTGELLEMINRSFGSYSAFKEHFSEAAKKVEGVGWAILVWAPRSHRLEILIAEKHQLMSQWDVIPLLPLDVWEH
AYYLQYKNEKAKYVDNWWNVVDWREPERRFASAKRVLWEPF
>Mature_281_residues
MNRDAYKEKISSWAKDLKDQMKDDPSLESHLEKLFQSLDDPRATEQEWYEQAEAVYQAISRSDASQAGRQPFRTVPIGGH
RLPSLPYSYSALEPYISKEIMFLHHTKHHQSYVDGLNRAEKELQKARQTKQFDLVNHWERELAFHGAGHYLHTIFWYAMH
PKGKRRPTGELLEMINRSFGSYSAFKEHFSEAAKKVEGVGWAILVWAPRSHRLEILIAEKHQLMSQWDVIPLLPLDVWEH
AYYLQYKNEKAKYVDNWWNVVDWREPERRFASAKRVLWEPF

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=197, Percent_Identity=43.1472081218274, Blast_Score=173, Evalue=2e-43,
Organism=Homo sapiens, GI67782305, Length=197, Percent_Identity=43.1472081218274, Blast_Score=173, Evalue=2e-43,
Organism=Homo sapiens, GI67782309, Length=197, Percent_Identity=37.0558375634518, Blast_Score=130, Evalue=1e-30,
Organism=Escherichia coli, GI1790342, Length=211, Percent_Identity=36.9668246445498, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=36.2694300518135, Blast_Score=127, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17506561, Length=197, Percent_Identity=40.1015228426396, Blast_Score=157, Evalue=4e-39,
Organism=Caenorhabditis elegans, GI17569479, Length=196, Percent_Identity=38.7755102040816, Blast_Score=152, Evalue=3e-37,
Organism=Saccharomyces cerevisiae, GI6321796, Length=207, Percent_Identity=36.7149758454106, Blast_Score=140, Evalue=2e-34,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=40.5, Blast_Score=160, Evalue=1e-39,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 33339; Mature: 33339

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRDAYKEKISSWAKDLKDQMKDDPSLESHLEKLFQSLDDPRATEQEWYEQAEAVYQAIS
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
RSDASQAGRQPFRTVPIGGHRLPSLPYSYSALEPYISKEIMFLHHTKHHQSYVDGLNRAE
HCHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELQKARQTKQFDLVNHWERELAFHGAGHYLHTIFWYAMHPKGKRRPTGELLEMINRSFG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
SYSAFKEHFSEAAKKVEGVGWAILVWAPRSHRLEILIAEKHQLMSQWDVIPLLPLDVWEH
CHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHH
AYYLQYKNEKAKYVDNWWNVVDWREPERRFASAKRVLWEPF
HHHEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNRDAYKEKISSWAKDLKDQMKDDPSLESHLEKLFQSLDDPRATEQEWYEQAEAVYQAIS
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
RSDASQAGRQPFRTVPIGGHRLPSLPYSYSALEPYISKEIMFLHHTKHHQSYVDGLNRAE
HCHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELQKARQTKQFDLVNHWERELAFHGAGHYLHTIFWYAMHPKGKRRPTGELLEMINRSFG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
SYSAFKEHFSEAAKKVEGVGWAILVWAPRSHRLEILIAEKHQLMSQWDVIPLLPLDVWEH
CHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHH
AYYLQYKNEKAKYVDNWWNVVDWREPERRFASAKRVLWEPF
HHHEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]