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The map label for this gene is ytfE [C]

Identifier: 52785839

GI number: 52785839

Start: 2027421

End: 2028134

Strand: Reverse

Name: ytfE [C]

Synonym: BLi02085

Alternate gene names: 52785839

Gene position: 2028134-2027421 (Counterclockwise)

Preceding gene: 52785844

Following gene: 52785835

Centisome position: 48.03

GC content: 45.66

Gene sequence:

>714_bases
ATGGAAGCAGTTTTTGATCAAAATACAAAAACGGGTGATATTGTTACACGTTTTCCAAGAGCCAGCCGGCTGCTGAAAGA
ATATCGCATCGACTTTTGCTGCGGGGGCAACCGCCCGATCGGTGAAGCGATAAAAGAGCAGGATTTAAATGAAGAAGAGA
TCTTAGCTAGAATCAATACATTATATCAAGAGACAAAGGCATTAAACGCAAAAGAGACGAACTGGAGTGAAGCCCCGTAT
TCACAGCTGATCGACCATGTGATTCATACGCACCATGCCTACCTGTATGAGGTGCTTCCTGAACTGTCAGGCTTTGTTAC
AAAAGTATACCGGGTTCATGGCATCCATCATCCGGAGCTCGCCCAGGTCCATCAATTGTTCCATCAGCTGAAAACAGAAC
TCGAACATCACCTCTTCCAGGAAGAGGAACATATTTTCCCGAAAGTGATGGCCTATGAAGAGACGCGATCAATGGACCGC
TTAGCAGAAGCGGTTCAGACGATCGACGTCCTTGAACAAGAGCATGAAGCCGCAGGCAGCATCCTGAAGGAACTGAGAAG
AGTGACCAATGACTATACCCTTCCTGAAGGGGCATGCACAACATATACACTGACTTACTTAAAGCTTGATGAATTGGAAA
CGGATCTTTTTCAGCACATTCACCTGGAAAACAATATTTTGTTCCCGCGGCTTGAAGCGGAAGCCAATCAATAA

Upstream 100 bases:

>100_bases
TCTGTCATTTTTTCAGAATGTGATGTAGATCACGATTTTCCCTCGGTGAACCCGTTACATTTAACCTATAGCATACAAAA
CACTTCAGGAGGTTTTACAA

Downstream 100 bases:

>100_bases
AACAAAAAGACAGAGGATTTTACTTCCTCTGTCTTTTTGTTTATCTATTCATCTGAAGCAATGTCTTTAACAGGCAGCGC
TTCTCCTTCCCGATACGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MEAVFDQNTKTGDIVTRFPRASRLLKEYRIDFCCGGNRPIGEAIKEQDLNEEEILARINTLYQETKALNAKETNWSEAPY
SQLIDHVIHTHHAYLYEVLPELSGFVTKVYRVHGIHHPELAQVHQLFHQLKTELEHHLFQEEEHIFPKVMAYEETRSMDR
LAEAVQTIDVLEQEHEAAGSILKELRRVTNDYTLPEGACTTYTLTYLKLDELETDLFQHIHLENNILFPRLEAEANQ

Sequences:

>Translated_237_residues
MEAVFDQNTKTGDIVTRFPRASRLLKEYRIDFCCGGNRPIGEAIKEQDLNEEEILARINTLYQETKALNAKETNWSEAPY
SQLIDHVIHTHHAYLYEVLPELSGFVTKVYRVHGIHHPELAQVHQLFHQLKTELEHHLFQEEEHIFPKVMAYEETRSMDR
LAEAVQTIDVLEQEHEAAGSILKELRRVTNDYTLPEGACTTYTLTYLKLDELETDLFQHIHLENNILFPRLEAEANQ
>Mature_237_residues
MEAVFDQNTKTGDIVTRFPRASRLLKEYRIDFCCGGNRPIGEAIKEQDLNEEEILARINTLYQETKALNAKETNWSEAPY
SQLIDHVIHTHHAYLYEVLPELSGFVTKVYRVHGIHHPELAQVHQLFHQLKTELEHHLFQEEEHIFPKVMAYEETRSMDR
LAEAVQTIDVLEQEHEAAGSILKELRRVTNDYTLPEGACTTYTLTYLKLDELETDLFQHIHLENNILFPRLEAEANQ

Specific function: Unknown

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ytfE [H]

Homologues:

Organism=Escherichia coli, GI1790654, Length=219, Percent_Identity=36.0730593607306, Blast_Score=140, Evalue=5e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312 [H]

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N [H]

EC number: NA

Molecular weight: Translated: 27635; Mature: 27635

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAVFDQNTKTGDIVTRFPRASRLLKEYRIDFCCGGNRPIGEAIKEQDLNEEEILARINT
CCCCCCCCCCCCHHHHHCHHHHHHHHHHCCHHEECCCCCHHHHHHHCCCCHHHHHHHHHH
LYQETKALNAKETNWSEAPYSQLIDHVIHTHHAYLYEVLPELSGFVTKVYRVHGIHHPEL
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
AQVHQLFHQLKTELEHHLFQEEEHIFPKVMAYEETRSMDRLAEAVQTIDVLEQEHEAAGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKELRRVTNDYTLPEGACTTYTLTYLKLDELETDLFQHIHLENNILFPRLEAEANQ
HHHHHHHHHCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCC
>Mature Secondary Structure
MEAVFDQNTKTGDIVTRFPRASRLLKEYRIDFCCGGNRPIGEAIKEQDLNEEEILARINT
CCCCCCCCCCCCHHHHHCHHHHHHHHHHCCHHEECCCCCHHHHHHHCCCCHHHHHHHHHH
LYQETKALNAKETNWSEAPYSQLIDHVIHTHHAYLYEVLPELSGFVTKVYRVHGIHHPEL
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
AQVHQLFHQLKTELEHHLFQEEEHIFPKVMAYEETRSMDRLAEAVQTIDVLEQEHEAAGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKELRRVTNDYTLPEGACTTYTLTYLKLDELETDLFQHIHLENNILFPRLEAEANQ
HHHHHHHHHCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]