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The map label for this gene is tnrA [H]

Identifier: 52785255

GI number: 52785255

Start: 1464304

End: 1464636

Strand: Reverse

Name: tnrA [H]

Synonym: BLi01490

Alternate gene names: 52785255

Gene position: 1464636-1464304 (Counterclockwise)

Preceding gene: 52785257

Following gene: 52785253

Centisome position: 34.69

GC content: 44.74

Gene sequence:

>333_bases
ATGACAGTCGAAGATCTTTCTTATAAAGATAAAAAAGTGATTTCAATTGGCATTGTCAGCGAGCTGACGGGTCTGTCGGT
CAGGCAGATCCGCTATTACGAAGAACGCAAGCTGATCTATCCGCAGCGCTCTACAAGAGGCACGCGCAAATATTCCTTTG
CTGACGTCGAACGGCTGATGGAAATCGCAAACAAGCGGGAAGACGGTGTTCAGACCGCAGAAATCCTCAAAGATATGCGC
AAAAAAGAACAAAGGCTAAAAAACGACCAGCAGCTCAGAAAGAAAATGCTCGAAGGCCAGCTTAACGCTCATTTTAAATA
CAAAAACCGTTAA

Upstream 100 bases:

>100_bases
TTAAAAATTTTTTCAACAATGTTAGATTTTCTGACAGATGTCAGGTTTTTTCGCGCGTTTTCTTATATAATACAAAAAAA
GTCATCTTAGGGGTGGGAAA

Downstream 100 bases:

>100_bases
AAAAACGAATCATTCCCTCCGTTTCATACCCTTTAAATCACCCGGAATTCGTCATAATCTCAACCAGATTTATTTCTTGG
TTTATCCGGTGATAAAATCT

Product: TnrA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MTVEDLSYKDKKVISIGIVSELTGLSVRQIRYYEERKLIYPQRSTRGTRKYSFADVERLMEIANKREDGVQTAEILKDMR
KKEQRLKNDQQLRKKMLEGQLNAHFKYKNR

Sequences:

>Translated_110_residues
MTVEDLSYKDKKVISIGIVSELTGLSVRQIRYYEERKLIYPQRSTRGTRKYSFADVERLMEIANKREDGVQTAEILKDMR
KKEQRLKNDQQLRKKMLEGQLNAHFKYKNR
>Mature_109_residues
TVEDLSYKDKKVISIGIVSELTGLSVRQIRYYEERKLIYPQRSTRGTRKYSFADVERLMEIANKREDGVQTAEILKDMRK
KEQRLKNDQQLRKKMLEGQLNAHFKYKNR

Specific function: Regulator of transcription that activates or represses many genes during nitrogen-limited growth; among others, it activates nrgAB, nasABCDE, gabP, and represses glnRA [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 13170; Mature: 13039

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVEDLSYKDKKVISIGIVSELTGLSVRQIRYYEERKLIYPQRSTRGTRKYSFADVERLM
CCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
EIANKREDGVQTAEILKDMRKKEQRLKNDQQLRKKMLEGQLNAHFKYKNR
HHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCEEECCC
>Mature Secondary Structure 
TVEDLSYKDKKVISIGIVSELTGLSVRQIRYYEERKLIYPQRSTRGTRKYSFADVERLM
CCCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
EIANKREDGVQTAEILKDMRKKEQRLKNDQQLRKKMLEGQLNAHFKYKNR
HHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8799114; 9384377; 11719184 [H]