Click here to switch to the map view.

The map label for this gene is ykmA [H]

Identifier: 52785183

GI number: 52785183

Start: 1411547

End: 1411999

Strand: Reverse

Name: ykmA [H]

Synonym: BLi01415

Alternate gene names: 52785183

Gene position: 1411999-1411547 (Counterclockwise)

Preceding gene: 52785186

Following gene: 52785169

Centisome position: 33.44

GC content: 47.68

Gene sequence:

>453_bases
ATGGCAAACGAATTTGAACATATGAGGCTTGACAGACAGCTTTGCTTTCTCCTTTATGCAAGCTCGCGTGAAATGACGAA
GCTTTACAAGCCTCTGCTTGATGAACTCAATATTACGTATCCGCAGTACCTCGCGCTCCTTTTATTATGGGAACACGGGG
AATTAAGCGTCAAAACAATGGGCAAGCTCCTTTATCTCGATTCCGGCACACTGACGCCGATGCTGAAGAGAATGGAGCAG
CACGGGCTTTTAACAAGAGAGCGGTCACCTGAAGATGAACGGTCTGTAATTGTCAGACTGACAGCAGGCGGCCAGGCACT
CCAAGAAAAAGCAAGCAGCATTCCGCAGCACATGATCGCCCAGACCGATCTGTCGGCTGGCGAACTGAAAAACTTGAAGC
AAACGCTTGAATCCCTTCTTGCTTCATTGACGAAAAAAACAGATGTGCTGTAA

Upstream 100 bases:

>100_bases
AACATCCGTTTTTGTTTTTTCGGGTTTTCAGCCGATCAATGGGAAAAGAACGCAAAATCTTATACAATAAAAAGGAACAT
AAAAAAGAGTTGGTGAAACG

Downstream 100 bases:

>100_bases
AGACAGCAAAAAGGCGCCTTCATATCGAAGGCGCCTCTTTTTTAAGAAATCACTTCAAGGTTGACATCAACATTTCCGGA
AATTGCTTTTGAATACGGGC

Product: YkmA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MANEFEHMRLDRQLCFLLYASSREMTKLYKPLLDELNITYPQYLALLLLWEHGELSVKTMGKLLYLDSGTLTPMLKRMEQ
HGLLTRERSPEDERSVIVRLTAGGQALQEKASSIPQHMIAQTDLSAGELKNLKQTLESLLASLTKKTDVL

Sequences:

>Translated_150_residues
MANEFEHMRLDRQLCFLLYASSREMTKLYKPLLDELNITYPQYLALLLLWEHGELSVKTMGKLLYLDSGTLTPMLKRMEQ
HGLLTRERSPEDERSVIVRLTAGGQALQEKASSIPQHMIAQTDLSAGELKNLKQTLESLLASLTKKTDVL
>Mature_149_residues
ANEFEHMRLDRQLCFLLYASSREMTKLYKPLLDELNITYPQYLALLLLWEHGELSVKTMGKLLYLDSGTLTPMLKRMEQH
GLLTRERSPEDERSVIVRLTAGGQALQEKASSIPQHMIAQTDLSAGELKNLKQTLESLLASLTKKTDVL

Specific function: Organic peroxide sensor. Represses the expression of the peroxide-inducible gene ohrA by cooperative binding to two inverted repeat elements [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17104; Mature: 16973

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANEFEHMRLDRQLCFLLYASSREMTKLYKPLLDELNITYPQYLALLLLWEHGELSVKTM
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHH
GKLLYLDSGTLTPMLKRMEQHGLLTRERSPEDERSVIVRLTAGGQALQEKASSIPQHMIA
HHHHEECCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
QTDLSAGELKNLKQTLESLLASLTKKTDVL
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANEFEHMRLDRQLCFLLYASSREMTKLYKPLLDELNITYPQYLALLLLWEHGELSVKTM
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHH
GKLLYLDSGTLTPMLKRMEQHGLLTRERSPEDERSVIVRLTAGGQALQEKASSIPQHMIA
HHHHEECCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
QTDLSAGELKNLKQTLESLLASLTKKTDVL
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 11418552; 11983871 [H]