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The map label for this gene is abnA [H]

Identifier: 52785065

GI number: 52785065

Start: 1298725

End: 1299711

Strand: Reverse

Name: abnA [H]

Synonym: BLi01295

Alternate gene names: 52785065

Gene position: 1299711-1298725 (Counterclockwise)

Preceding gene: 52785068

Following gene: 52785061

Centisome position: 30.78

GC content: 46.5

Gene sequence:

>987_bases
ATGTTAAAGACATCGAAATTTGAAAGGAGAACAACTGTGGCTAAGACTATCATTTCTGGTTTTATTTTATTTTTTCTGCT
TATTTTCTCGGCGGCTGAACCAACATCAGCGGCTTTTTGGGATACAAAAGGAGACAACATTATTCATGATCCTTCCATGA
TTAAAGAAGGAAATACGTGGTATACATTCGGCACGGGTATCGGCAATGGAATCCGCGTCATCAAATCGACAGACGGAAAA
ACATGGAGCGCAGCGCCAAGCATATTTGCAACTCCATTATCATGGTGGAAAAAGTACGTGCCGAACCATGAAGAAAACCA
ATGGGCGCCTGATATCAGCTATTATAATGGACGCTATTGGCTTTATTATGCGGTATCCGCGTTCGGCTCCAATACTTCGG
CGATCGGACTGGCTTCAACAGACCGAATCTCATCCGGAAATTGGCGCGACGACGGGCTTGTCATCCGGACGACGACCTCT
AACAATTATAATGCAATCGACCCTGAGTTAGTGATTGATAAAGAAGGAAATCCGTGGCTGTCCTTCGGCTCGTTTTGGAG
CGGCATCAAGCTGACAAAGCTTGATAAAAAAACGATGAAACCTACAGGGAAGGTTTATTCCATCGCATCAAGGCCGAACA
ACGGAGGAGCGGTTGAAGCGCCGTCTATCACATATAAAAACGGCTACTATTATTTATTCGTTTCGTTCGATAAATGCTGT
CAAGGTGTGAACAGCACGTATAAGATCGCTTACGGCCGCTCGACAAAAATCACGGGGCCTTACTATGACAAAAGCGGCAA
GAAAATGACGGAAGGCGGAGGCACAATCCTCGACTCCGGAAACGACCAGTGGAAGGGCCCGGGCGGCGCGGATATCGTGA
ACGGCAACATCATCGTCAGACATGGTTATGATGCGCTTGACAACGGGGCGCCTAAGCTGCTGATCAATGATTTAAACTGG
GATTCTAAAGGCTGGCCGAAGTATTAG

Upstream 100 bases:

>100_bases
AGGACTAGAAAACAAGTCCTTTGGCTGATTGAGAGACAGCCAATCCCTGCTAAAATAAAGTTCGTCTTGTTGGGAAATAT
TTCACAAAAGGGAGGGCCGA

Downstream 100 bases:

>100_bases
TTATTAAACCGAGCAGATGTTTTCTGCTTGGTTTTTTCTGTTGCTTTAGCAGTTCCATATAAACGCTTTATCCCAAAATG
ATCATGCCACTATATTCATC

Product: AbnA

Products: NA

Alternate protein names: Endo-1,5-alpha-L-arabinanase; ABN; Endo-arabinanase [H]

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MLKTSKFERRTTVAKTIISGFILFFLLIFSAAEPTSAAFWDTKGDNIIHDPSMIKEGNTWYTFGTGIGNGIRVIKSTDGK
TWSAAPSIFATPLSWWKKYVPNHEENQWAPDISYYNGRYWLYYAVSAFGSNTSAIGLASTDRISSGNWRDDGLVIRTTTS
NNYNAIDPELVIDKEGNPWLSFGSFWSGIKLTKLDKKTMKPTGKVYSIASRPNNGGAVEAPSITYKNGYYYLFVSFDKCC
QGVNSTYKIAYGRSTKITGPYYDKSGKKMTEGGGTILDSGNDQWKGPGGADIVNGNIIVRHGYDALDNGAPKLLINDLNW
DSKGWPKY

Sequences:

>Translated_328_residues
MLKTSKFERRTTVAKTIISGFILFFLLIFSAAEPTSAAFWDTKGDNIIHDPSMIKEGNTWYTFGTGIGNGIRVIKSTDGK
TWSAAPSIFATPLSWWKKYVPNHEENQWAPDISYYNGRYWLYYAVSAFGSNTSAIGLASTDRISSGNWRDDGLVIRTTTS
NNYNAIDPELVIDKEGNPWLSFGSFWSGIKLTKLDKKTMKPTGKVYSIASRPNNGGAVEAPSITYKNGYYYLFVSFDKCC
QGVNSTYKIAYGRSTKITGPYYDKSGKKMTEGGGTILDSGNDQWKGPGGADIVNGNIIVRHGYDALDNGAPKLLINDLNW
DSKGWPKY
>Mature_328_residues
MLKTSKFERRTTVAKTIISGFILFFLLIFSAAEPTSAAFWDTKGDNIIHDPSMIKEGNTWYTFGTGIGNGIRVIKSTDGK
TWSAAPSIFATPLSWWKKYVPNHEENQWAPDISYYNGRYWLYYAVSAFGSNTSAIGLASTDRISSGNWRDDGLVIRTTTS
NNYNAIDPELVIDKEGNPWLSFGSFWSGIKLTKLDKKTMKPTGKVYSIASRPNNGGAVEAPSITYKNGYYYLFVSFDKCC
QGVNSTYKIAYGRSTKITGPYYDKSGKKMTEGGGTILDSGNDQWKGPGGADIVNGNIIVRHGYDALDNGAPKLLINDLNW
DSKGWPKY

Specific function: Catalyzes the hydrolysis of the alpha-1,5-linked L- arabinofuranoside backbone. Its preferred substrate is linear 1,5- alpha-L-arabinan. It is also active towards branched sugar beet arabinan, but inactive towards larch wood arabinogalactan, wheat arabino

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006710
- InterPro:   IPR016840 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.99 [H]

Molecular weight: Translated: 36358; Mature: 36358

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKTSKFERRTTVAKTIISGFILFFLLIFSAAEPTSAAFWDTKGDNIIHDPSMIKEGNTW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEECCHHHCCCCEE
YTFGTGIGNGIRVIKSTDGKTWSAAPSIFATPLSWWKKYVPNHEENQWAPDISYYNGRYW
EEEECCCCCCEEEEECCCCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEECCEEE
LYYAVSAFGSNTSAIGLASTDRISSGNWRDDGLVIRTTTSNNYNAIDPELVIDKEGNPWL
EEEEEECCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCE
SFGSFWSGIKLTKLDKKTMKPTGKVYSIASRPNNGGAVEAPSITYKNGYYYLFVSFDKCC
ECCCCCCCEEEEECCHHHCCCCCCEEEEECCCCCCCEEECCEEEEECCEEEEEEEHHHHH
QGVNSTYKIAYGRSTKITGPYYDKSGKKMTEGGGTILDSGNDQWKGPGGADIVNGNIIVR
CCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCEEECCCEEEE
HGYDALDNGAPKLLINDLNWDSKGWPKY
CCCCHHHCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MLKTSKFERRTTVAKTIISGFILFFLLIFSAAEPTSAAFWDTKGDNIIHDPSMIKEGNTW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEECCHHHCCCCEE
YTFGTGIGNGIRVIKSTDGKTWSAAPSIFATPLSWWKKYVPNHEENQWAPDISYYNGRYW
EEEECCCCCCEEEEECCCCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEECCEEE
LYYAVSAFGSNTSAIGLASTDRISSGNWRDDGLVIRTTTSNNYNAIDPELVIDKEGNPWL
EEEEEECCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCE
SFGSFWSGIKLTKLDKKTMKPTGKVYSIASRPNNGGAVEAPSITYKNGYYYLFVSFDKCC
ECCCCCCCEEEEECCHHHCCCCCCEEEEECCCCCCCEEECCEEEEECCEEEEEEEHHHHH
QGVNSTYKIAYGRSTKITGPYYDKSGKKMTEGGGTILDSGNDQWKGPGGADIVNGNIIVR
CCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCEEECCCEEEE
HGYDALDNGAPKLLINDLNWDSKGWPKY
CCCCHHHCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]