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The map label for this gene is yjcD [H]

Identifier: 52785047

GI number: 52785047

Start: 1282422

End: 1284704

Strand: Reverse

Name: yjcD [H]

Synonym: BLi01277

Alternate gene names: 52785047

Gene position: 1284704-1282422 (Counterclockwise)

Preceding gene: 52785048

Following gene: 52785044

Centisome position: 30.42

GC content: 48.75

Gene sequence:

>2283_bases
TTGAAATGCGCCCGATTCAATAACCGAGACATTCATATACATACATATTCGAGAGAACACCTGCAATTCCTCTTTGATGA
AGCAAGAAAAGACAGGATCACGTGTAAATATTGCGGCTTGCCGCTCAGACTGAAATTGTCGATTCATGAAGAGCCGCATT
TTTTCCACCGGGAAAACGGGGATTTTTCTCAATGTGAAGCGGCTTGCTTAAATGAGAAGACAGAGCAGAAGACCAAACAG
AACGATTATACTGAAAGCGGCGTTTTCCGCCTCCCGAAAGGCAAAGCGATCGGAGAGGAAAAGAAGGCGGACACGGACTT
CTGGACGCCGCCTCGCGAAGCTTCCATCCATTCTCCTTTCTCTCCAGCGGCAGAAACGGCTCCGGAACCGGTCTTTCCGA
ATGTGCCGCTGAATGAGAAACAGCTTGCCGCCGTGACGGCCCCCGAAGAACCCCTTCTCGTTCTGGCCGGCGCGGGAAGC
GGAAAAACGCGGGTATTAACCGCGCGAGCGGCTTATATGATATCCCGGCTCGATATCCCGCCTTCTGCCATATTGCTCGT
CACATTCACGACAAAAGCTGTGAAAGAAATGAAAGAGCGGATGGCCTCGCTATACGGTTTGCCGATGCAGACTGTGAACC
GCCTCGTGACAGGCACCTTCCACAGCTTTTTTTACAAAATTCTTTATCATCATGATCCGGCCAAATGGAATGGCGAGCAC
CTGCTGAAATGGGAATGGCAAAAAGAACAGTACATCAAAATGGCCCTTGCCGAAGAAGGGCTTGATGAAAAAGACTTTCC
GGTTGACCAGGCGATCCAGCAGATCGGCTACTGGAAGAACGCTTATCTTCCGGGTGAACAGATTCCGCTTGAAGACGAAT
GGGAAAAGCGGGTTCACCGGCTGTACCGTCATTATGAAGAACAAAAAGCAGCGCGGCGCCAATTCGATTTCGACGATATG
GCATCTGCGTGCTGGCAGCTGTTTCAAGAACAGCCGGACATTTTAAAGCGATATCAGACGCGCTTTCACGCGATTTTGAT
TGACGAATTTCAGGACATTAACCCTGTTCAATACGCCATCATCAAGCTCTTGGCAAGCCCCGAAAACAACCTGACCTGTG
TCGGGGATGATGATCAGTCAATCTACGCGTTCAGAGGGAGCAGTCCTTCTTTTATACTCGATTTTGAAAAAGATTATCCG
AAGGCGAAAACGGTCCGCCTCACGACGAATTACAGATCGAGCCATCCGATTGTGGCAAGCGCCGATATGGTCGTAAGGAA
AAACAAAAAGCGTTTTCCGAAAACATTAAGCGCCGCGAGAGACGACCGCCAAAAACCGCTCTTATTTTATCCTTATGATG
AAGAGGAAGAAGCGATTATGATCGTCTCTGATATCCAAGAAAAAATTGAAATGGGCGCAAAGCCTGATGACTTCGCCATC
CTATACCGGACAAACAGCAGCGGCCGCGCCATTTTTGAACGTCTGCACCAGTCAGCCATTCCGTACACGGCTGAACAAGG
CGTCCGGTCGTTTTACAGCAGGAGGATCGTCCGGCAGATGCTGGCCTATCTCTACTTAAGCCAAAATCAAGATGACGCGG
AAGCCGTAAAGCAGATTTTACCCGCCCTCTTTCTCAAGCAGTCCGCTTTAAACACGCTTAAAGCGCTCTCGATTACAGAA
GATTGCACAATGGTTCAGGCGCTTGAAAAATTGACTGACATTAAACCGTTTCAGCTTGATAAAATAAAAAAAATCGTTCC
TTTTTTCCCAGGCTTAAAAACGATGAAGCCGGTTGAAGCCATCTCTTTCGCAGAAGAAAAGATGGGCTTTTCCGATTACC
TGAAAAAGCGCGGAAACGAAGGGAACAAGCTCGAAAAAGGGTCTGACGATCTGCGGGATCTCAAAACTGCGGCAAAAAAA
TTCAAAACGATCCCCGAATTTCTTGAGCATGTCGATCATATGAGAGCCGCGGAAAAGCAAAAAGCTGACGGATACGGTGT
TCAGCTTTTGACAATTCATCGTGCGAAAGGGCTTGAATTTAAAACGGTCTATATACTGGGAGTGCAGGACGGCTCGATTC
CGCATGACTTTGCCCTGGAGACAGCGAGAAAAGGCGATGAAACCGCTCTTGAAGAAGAGCGGAGGCTGCTGTATGTCGCC
ATGACCCGGGCCGAGGACCGCCTGTATATCAGCGTCCCTTCCTTCAGAAGGGGAAGAACGGCATACCGCTCAAGGTTTTT
ACAGCCTATTTTACGCCCGAATCCACAAGTTCAGCTGCAATAA

Upstream 100 bases:

>100_bases
TTAATTCCCAAAAATCTACTGTTTTAAACGGTTTTCATTTGATATGATAGACGTTGTCTCATGACACCAGACGACTACCC
ATTAATTGGAGGACCTCTTT

Downstream 100 bases:

>100_bases
AAGACACCGTGCCCTCCTTTTATCGGAAGGCGCGGTGTTTATTTTTTGCTGTTCATCATTTTCGCGATCGTGTTGAAATC
CATTTTTTCTTTGCCGCTTA

Product: YjcD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 760; Mature: 760

Protein sequence:

>760_residues
MKCARFNNRDIHIHTYSREHLQFLFDEARKDRITCKYCGLPLRLKLSIHEEPHFFHRENGDFSQCEAACLNEKTEQKTKQ
NDYTESGVFRLPKGKAIGEEKKADTDFWTPPREASIHSPFSPAAETAPEPVFPNVPLNEKQLAAVTAPEEPLLVLAGAGS
GKTRVLTARAAYMISRLDIPPSAILLVTFTTKAVKEMKERMASLYGLPMQTVNRLVTGTFHSFFYKILYHHDPAKWNGEH
LLKWEWQKEQYIKMALAEEGLDEKDFPVDQAIQQIGYWKNAYLPGEQIPLEDEWEKRVHRLYRHYEEQKAARRQFDFDDM
ASACWQLFQEQPDILKRYQTRFHAILIDEFQDINPVQYAIIKLLASPENNLTCVGDDDQSIYAFRGSSPSFILDFEKDYP
KAKTVRLTTNYRSSHPIVASADMVVRKNKKRFPKTLSAARDDRQKPLLFYPYDEEEEAIMIVSDIQEKIEMGAKPDDFAI
LYRTNSSGRAIFERLHQSAIPYTAEQGVRSFYSRRIVRQMLAYLYLSQNQDDAEAVKQILPALFLKQSALNTLKALSITE
DCTMVQALEKLTDIKPFQLDKIKKIVPFFPGLKTMKPVEAISFAEEKMGFSDYLKKRGNEGNKLEKGSDDLRDLKTAAKK
FKTIPEFLEHVDHMRAAEKQKADGYGVQLLTIHRAKGLEFKTVYILGVQDGSIPHDFALETARKGDETALEEERRLLYVA
MTRAEDRLYISVPSFRRGRTAYRSRFLQPILRPNPQVQLQ

Sequences:

>Translated_760_residues
MKCARFNNRDIHIHTYSREHLQFLFDEARKDRITCKYCGLPLRLKLSIHEEPHFFHRENGDFSQCEAACLNEKTEQKTKQ
NDYTESGVFRLPKGKAIGEEKKADTDFWTPPREASIHSPFSPAAETAPEPVFPNVPLNEKQLAAVTAPEEPLLVLAGAGS
GKTRVLTARAAYMISRLDIPPSAILLVTFTTKAVKEMKERMASLYGLPMQTVNRLVTGTFHSFFYKILYHHDPAKWNGEH
LLKWEWQKEQYIKMALAEEGLDEKDFPVDQAIQQIGYWKNAYLPGEQIPLEDEWEKRVHRLYRHYEEQKAARRQFDFDDM
ASACWQLFQEQPDILKRYQTRFHAILIDEFQDINPVQYAIIKLLASPENNLTCVGDDDQSIYAFRGSSPSFILDFEKDYP
KAKTVRLTTNYRSSHPIVASADMVVRKNKKRFPKTLSAARDDRQKPLLFYPYDEEEEAIMIVSDIQEKIEMGAKPDDFAI
LYRTNSSGRAIFERLHQSAIPYTAEQGVRSFYSRRIVRQMLAYLYLSQNQDDAEAVKQILPALFLKQSALNTLKALSITE
DCTMVQALEKLTDIKPFQLDKIKKIVPFFPGLKTMKPVEAISFAEEKMGFSDYLKKRGNEGNKLEKGSDDLRDLKTAAKK
FKTIPEFLEHVDHMRAAEKQKADGYGVQLLTIHRAKGLEFKTVYILGVQDGSIPHDFALETARKGDETALEEERRLLYVA
MTRAEDRLYISVPSFRRGRTAYRSRFLQPILRPNPQVQLQ
>Mature_760_residues
MKCARFNNRDIHIHTYSREHLQFLFDEARKDRITCKYCGLPLRLKLSIHEEPHFFHRENGDFSQCEAACLNEKTEQKTKQ
NDYTESGVFRLPKGKAIGEEKKADTDFWTPPREASIHSPFSPAAETAPEPVFPNVPLNEKQLAAVTAPEEPLLVLAGAGS
GKTRVLTARAAYMISRLDIPPSAILLVTFTTKAVKEMKERMASLYGLPMQTVNRLVTGTFHSFFYKILYHHDPAKWNGEH
LLKWEWQKEQYIKMALAEEGLDEKDFPVDQAIQQIGYWKNAYLPGEQIPLEDEWEKRVHRLYRHYEEQKAARRQFDFDDM
ASACWQLFQEQPDILKRYQTRFHAILIDEFQDINPVQYAIIKLLASPENNLTCVGDDDQSIYAFRGSSPSFILDFEKDYP
KAKTVRLTTNYRSSHPIVASADMVVRKNKKRFPKTLSAARDDRQKPLLFYPYDEEEEAIMIVSDIQEKIEMGAKPDDFAI
LYRTNSSGRAIFERLHQSAIPYTAEQGVRSFYSRRIVRQMLAYLYLSQNQDDAEAVKQILPALFLKQSALNTLKALSITE
DCTMVQALEKLTDIKPFQLDKIKKIVPFFPGLKTMKPVEAISFAEEKMGFSDYLKKRGNEGNKLEKGSDDLRDLKTAAKK
FKTIPEFLEHVDHMRAAEKQKADGYGVQLLTIHRAKGLEFKTVYILGVQDGSIPHDFALETARKGDETALEEERRLLYVA
MTRAEDRLYISVPSFRRGRTAYRSRFLQPILRPNPQVQLQ

Specific function: May be involved in the generation of recombinogenic substrates for the subsequent action of recA [H]

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI2367296, Length=645, Percent_Identity=34.1085271317829, Blast_Score=305, Evalue=5e-84,
Organism=Escherichia coli, GI48994965, Length=634, Percent_Identity=30.7570977917981, Blast_Score=238, Evalue=1e-63,
Organism=Escherichia coli, GI1787196, Length=387, Percent_Identity=28.1653746770026, Blast_Score=104, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6322369, Length=492, Percent_Identity=30.0813008130081, Blast_Score=145, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6324477, Length=448, Percent_Identity=24.7767857142857, Blast_Score=90, Evalue=1e-18,

Paralogues:

None

Copy number: 3000 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014017
- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 87725; Mature: 87725

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCARFNNRDIHIHTYSREHLQFLFDEARKDRITCKYCGLPLRLKLSIHEEPHFFHRENG
CCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCEECCCC
DFSQCEAACLNEKTEQKTKQNDYTESGVFRLPKGKAIGEEKKADTDFWTPPREASIHSPF
CHHHHHHHHHCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SPAAETAPEPVFPNVPLNEKQLAAVTAPEEPLLVLAGAGSGKTRVLTARAAYMISRLDIP
CCHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEHHHHHHHHHCCCC
PSAILLVTFTTKAVKEMKERMASLYGLPMQTVNRLVTGTFHSFFYKILYHHDPAKWNGEH
CCEEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
LLKWEWQKEQYIKMALAEEGLDEKDFPVDQAIQQIGYWKNAYLPGEQIPLEDEWEKRVHR
EEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
LYRHYEEQKAARRQFDFDDMASACWQLFQEQPDILKRYQTRFHAILIDEFQDINPVQYAI
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCCCHHHHHH
IKLLASPENNLTCVGDDDQSIYAFRGSSPSFILDFEKDYPKAKTVRLTTNYRSSHPIVAS
HHHHCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCCEEEC
ADMVVRKNKKRFPKTLSAARDDRQKPLLFYPYDEEEEAIMIVSDIQEKIEMGAKPDDFAI
CHHHHHCCHHHCHHHHHHHHCCCCCCEEECCCCCCCCEEEEHHHHHHHHHCCCCCCCEEE
LYRTNSSGRAIFERLHQSAIPYTAEQGVRSFYSRRIVRQMLAYLYLSQNQDDAEAVKQIL
EEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
PALFLKQSALNTLKALSITEDCTMVQALEKLTDIKPFQLDKIKKIVPFFPGLKTMKPVEA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHH
ISFAEEKMGFSDYLKKRGNEGNKLEKGSDDLRDLKTAAKKFKTIPEFLEHVDHMRAAEKQ
HHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KADGYGVQLLTIHRAKGLEFKTVYILGVQDGSIPHDFALETARKGDETALEEERRLLYVA
CCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHCEEEEE
MTRAEDRLYISVPSFRRGRTAYRSRFLQPILRPNPQVQLQ
EECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEC
>Mature Secondary Structure
MKCARFNNRDIHIHTYSREHLQFLFDEARKDRITCKYCGLPLRLKLSIHEEPHFFHRENG
CCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCEECCCC
DFSQCEAACLNEKTEQKTKQNDYTESGVFRLPKGKAIGEEKKADTDFWTPPREASIHSPF
CHHHHHHHHHCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SPAAETAPEPVFPNVPLNEKQLAAVTAPEEPLLVLAGAGSGKTRVLTARAAYMISRLDIP
CCHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEHHHHHHHHHCCCC
PSAILLVTFTTKAVKEMKERMASLYGLPMQTVNRLVTGTFHSFFYKILYHHDPAKWNGEH
CCEEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
LLKWEWQKEQYIKMALAEEGLDEKDFPVDQAIQQIGYWKNAYLPGEQIPLEDEWEKRVHR
EEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
LYRHYEEQKAARRQFDFDDMASACWQLFQEQPDILKRYQTRFHAILIDEFQDINPVQYAI
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCCCHHHHHH
IKLLASPENNLTCVGDDDQSIYAFRGSSPSFILDFEKDYPKAKTVRLTTNYRSSHPIVAS
HHHHCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCCEEEC
ADMVVRKNKKRFPKTLSAARDDRQKPLLFYPYDEEEEAIMIVSDIQEKIEMGAKPDDFAI
CHHHHHCCHHHCHHHHHHHHCCCCCCEEECCCCCCCCEEEEHHHHHHHHHCCCCCCCEEE
LYRTNSSGRAIFERLHQSAIPYTAEQGVRSFYSRRIVRQMLAYLYLSQNQDDAEAVKQIL
EEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
PALFLKQSALNTLKALSITEDCTMVQALEKLTDIKPFQLDKIKKIVPFFPGLKTMKPVEA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHH
ISFAEEKMGFSDYLKKRGNEGNKLEKGSDDLRDLKTAAKKFKTIPEFLEHVDHMRAAEKQ
HHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KADGYGVQLLTIHRAKGLEFKTVYILGVQDGSIPHDFALETARKGDETALEEERRLLYVA
CCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHCEEEEE
MTRAEDRLYISVPSFRRGRTAYRSRFLQPILRPNPQVQLQ
EECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]