Definition Bacillus licheniformis ATCC 14580, complete genome.
Accession NC_006322
Length 4,222,645

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The map label for this gene is yhdF [H]

Identifier: 52784784

GI number: 52784784

Start: 1014956

End: 1015825

Strand: Direct

Name: yhdF [H]

Synonym: BLi01012

Alternate gene names: 52784784

Gene position: 1014956-1015825 (Clockwise)

Preceding gene: 52784783

Following gene: 52784785

Centisome position: 24.04

GC content: 50.92

Gene sequence:

>870_bases
ATGAATCCGGCAAACAGACAGACAGATGGACAGAAAGCGCAAAAACAAGAAAAACAACCCGGTGCTGAGCACAAGATGGT
GCCCCTTCCGCTCTCGGAAGACCGCGACTACAAAGGAAGCGGCAAATTAAAAGGAAAAACAGCGATTATTACCGGAGGAG
ACAGCGGAATCGGCAGAGCGGCCGCCATTGCATACGCCAAAGAAGGTGCCGACATTGCCGTCATGTACTTGGATGAACAC
AAGGATGCCGAGGAAACGAAAGAGCGAATCGAACAGGAAGGAGCAGAATGCCTCTTGATTCCCGGAGATGTCGGTGATGA
GGCGCATTGCAAATCATCTGTCGAAAAAACGGTGAATCACTTTGGCGGGCTTGACATTCTCGTGAACAATGCTGCAGAAC
AGCATCCGCAAAAAGGGATAGAAGATATTTCGACCGAACAGCTTGAAAGAACGTTTAGAACGAATATTTTCTCCATGTTC
CATATGACAAAAGCCGCGCTCCCGCATTTAGGGGAAGGCAGCGCGATCATCAATACCGCATCGATCACGGCGTATGAAGG
CAGTCCGGCGCTGATTGACTATTCGAGCACAAAGGGCGCGATTGTCGCGTTTACCCGTTCGATGGCTGCATCCCTTGTCA
AAAAAGGAATACGCGTCAACGCTGTAGCGCCGGGTCCCATTTGGACGCCGCTTATTCCGGCTACTTTTCCGCCGGAAAAA
ACGGAAAAACACGGCACAGATACGCCGATGGGAAGGCCCGGACAGCCTTCTGAACACGCTGCAGTGTATGTTCTGCTCGC
TTCAGACGACTCCTCTTATATGACAGGACAGACGATCCACATCAACGGCGGAAGATATGTGACGACATAA

Upstream 100 bases:

>100_bases
CGTACCTCTGCCTGACAAGTAACCTGTCTCGCCCGTTTGCGTTTAAGGATGCCGGAATCGTGGTAACTGAGCACTAAACA
ATGGTGAAGAGGTGAGACAA

Downstream 100 bases:

>100_bases
TCCCAACCGGCTGCTTATTGTAAGGCAGCCGGTTTTTTTCTGTTTGTTTTTTCGGAAAAATAAGAATTTGAAAGACCACT
TTCAAAAAAGCTGCCCCGTA

Product: YhdF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MNPANRQTDGQKAQKQEKQPGAEHKMVPLPLSEDRDYKGSGKLKGKTAIITGGDSGIGRAAAIAYAKEGADIAVMYLDEH
KDAEETKERIEQEGAECLLIPGDVGDEAHCKSSVEKTVNHFGGLDILVNNAAEQHPQKGIEDISTEQLERTFRTNIFSMF
HMTKAALPHLGEGSAIINTASITAYEGSPALIDYSSTKGAIVAFTRSMAASLVKKGIRVNAVAPGPIWTPLIPATFPPEK
TEKHGTDTPMGRPGQPSEHAAVYVLLASDDSSYMTGQTIHINGGRYVTT

Sequences:

>Translated_289_residues
MNPANRQTDGQKAQKQEKQPGAEHKMVPLPLSEDRDYKGSGKLKGKTAIITGGDSGIGRAAAIAYAKEGADIAVMYLDEH
KDAEETKERIEQEGAECLLIPGDVGDEAHCKSSVEKTVNHFGGLDILVNNAAEQHPQKGIEDISTEQLERTFRTNIFSMF
HMTKAALPHLGEGSAIINTASITAYEGSPALIDYSSTKGAIVAFTRSMAASLVKKGIRVNAVAPGPIWTPLIPATFPPEK
TEKHGTDTPMGRPGQPSEHAAVYVLLASDDSSYMTGQTIHINGGRYVTT
>Mature_289_residues
MNPANRQTDGQKAQKQEKQPGAEHKMVPLPLSEDRDYKGSGKLKGKTAIITGGDSGIGRAAAIAYAKEGADIAVMYLDEH
KDAEETKERIEQEGAECLLIPGDVGDEAHCKSSVEKTVNHFGGLDILVNNAAEQHPQKGIEDISTEQLERTFRTNIFSMF
HMTKAALPHLGEGSAIINTASITAYEGSPALIDYSSTKGAIVAFTRSMAASLVKKGIRVNAVAPGPIWTPLIPATFPPEK
TEKHGTDTPMGRPGQPSEHAAVYVLLASDDSSYMTGQTIHINGGRYVTT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=228, Percent_Identity=34.2105263157895, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=32.1138211382114, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=31.2757201646091, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=28.6274509803922, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=29.296875, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI31542939, Length=211, Percent_Identity=33.6492890995261, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI19923817, Length=267, Percent_Identity=27.7153558052434, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=32.5490196078431, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=30.4878048780488, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=28.740157480315, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI83715985, Length=255, Percent_Identity=26.2745098039216, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=25.8064516129032, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI224922801, Length=176, Percent_Identity=32.9545454545455, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI210032110, Length=185, Percent_Identity=30.8108108108108, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=32.4607329842932, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI10190704, Length=258, Percent_Identity=27.5193798449612, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI142976729, Length=195, Percent_Identity=29.2307692307692, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI31543615, Length=188, Percent_Identity=30.8510638297872, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI40254986, Length=141, Percent_Identity=34.7517730496454, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI7706318, Length=228, Percent_Identity=25, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=29.5081967213115, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=26.4248704663212, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1789378, Length=288, Percent_Identity=45.4861111111111, Blast_Score=259, Evalue=1e-70,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=34.4262295081967, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=33.739837398374, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=32.2448979591837, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=33.8582677165354, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=31.7269076305221, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=34.7826086956522, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1788459, Length=242, Percent_Identity=30.1652892561983, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=30.1587301587302, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=29.3877551020408, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=26.4822134387352, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787526, Length=256, Percent_Identity=24.609375, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787545, Length=254, Percent_Identity=25.1968503937008, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=36, Blast_Score=133, Evalue=9e-32,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=36.7424242424242, Blast_Score=131, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=34.8484848484849, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=33.587786259542, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=35.7976653696498, Blast_Score=121, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=34.2205323193916, Blast_Score=120, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=36.2595419847328, Blast_Score=120, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=34.9809885931559, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=33.206106870229, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=34.9397590361446, Blast_Score=118, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=32.5757575757576, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=33.969465648855, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=32.6996197718631, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=31.5384615384615, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=29.8387096774194, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=31.5384615384615, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=32, Blast_Score=111, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=33.9622641509434, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17555706, Length=260, Percent_Identity=33.4615384615385, Blast_Score=111, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=31.5789473684211, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=31.8181818181818, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=30.859375, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=34.0909090909091, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=32.183908045977, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17536025, Length=259, Percent_Identity=30.8880308880309, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=32.5757575757576, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17536651, Length=259, Percent_Identity=28.957528957529, Blast_Score=91, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI193203115, Length=234, Percent_Identity=28.6324786324786, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI212645366, Length=252, Percent_Identity=28.1746031746032, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193203117, Length=211, Percent_Identity=29.3838862559242, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17564282, Length=208, Percent_Identity=30.2884615384615, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71982365, Length=209, Percent_Identity=33.4928229665072, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17561272, Length=263, Percent_Identity=31.1787072243346, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17567345, Length=196, Percent_Identity=30.1020408163265, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=29.7979797979798, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508651, Length=247, Percent_Identity=26.3157894736842, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=27.3469387755102, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17558628, Length=254, Percent_Identity=29.5275590551181, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=31.8181818181818, Blast_Score=93, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=26.8, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=201, Percent_Identity=26.865671641791, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24644339, Length=258, Percent_Identity=34.4961240310078, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=34.8, Blast_Score=131, Evalue=6e-31,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=32.4, Blast_Score=130, Evalue=7e-31,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=33.8645418326693, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=32.6693227091633, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=32.4110671936759, Blast_Score=111, Evalue=5e-25,
Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=29.6875, Blast_Score=104, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24644337, Length=254, Percent_Identity=34.6456692913386, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=27.1255060728745, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24580925, Length=223, Percent_Identity=27.3542600896861, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24665243, Length=211, Percent_Identity=26.5402843601896, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI221331218, Length=214, Percent_Identity=26.6355140186916, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21357673, Length=200, Percent_Identity=31, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24665247, Length=212, Percent_Identity=26.4150943396226, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI281364892, Length=193, Percent_Identity=26.9430051813472, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI221331216, Length=215, Percent_Identity=26.5116279069767, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=26.1780104712042, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24584748, Length=191, Percent_Identity=26.1780104712042, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30939; Mature: 30939

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MNPANRQTDGQKAQKQEKQPGAEHKMVPLPLSEDRDYKGSGKLKGKTAIITGGDSGIGRA
CCCCCCCCCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHH
AAIAYAKEGADIAVMYLDEHKDAEETKERIEQEGAECLLIPGDVGDEAHCKSSVEKTVNH
HHEEECCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
FGGLDILVNNAAEQHPQKGIEDISTEQLERTFRTNIFSMFHMTKAALPHLGEGSAIINTA
HCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
SITAYEGSPALIDYSSTKGAIVAFTRSMAASLVKKGIRVNAVAPGPIWTPLIPATFPPEK
EEEEECCCCCEEEECCCCCEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCC
TEKHGTDTPMGRPGQPSEHAAVYVLLASDDSSYMTGQTIHINGGRYVTT
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCEEEECCCEEECC
>Mature Secondary Structure
MNPANRQTDGQKAQKQEKQPGAEHKMVPLPLSEDRDYKGSGKLKGKTAIITGGDSGIGRA
CCCCCCCCCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHH
AAIAYAKEGADIAVMYLDEHKDAEETKERIEQEGAECLLIPGDVGDEAHCKSSVEKTVNH
HHEEECCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
FGGLDILVNNAAEQHPQKGIEDISTEQLERTFRTNIFSMFHMTKAALPHLGEGSAIINTA
HCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
SITAYEGSPALIDYSSTKGAIVAFTRSMAASLVKKGIRVNAVAPGPIWTPLIPATFPPEK
EEEEECCCCCEEEECCCCCEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCC
TEKHGTDTPMGRPGQPSEHAAVYVLLASDDSSYMTGQTIHINGGRYVTT
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCEEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]