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The map label for this gene is yhcJ [H]

Identifier: 52784746

GI number: 52784746

Start: 971616

End: 972434

Strand: Direct

Name: yhcJ [H]

Synonym: BLi00974

Alternate gene names: 52784746

Gene position: 971616-972434 (Clockwise)

Preceding gene: 52784745

Following gene: 52784747

Centisome position: 23.01

GC content: 48.23

Gene sequence:

>819_bases
ATGAAAAAATTTGCATGTGTTGTGATCTTCCTGCTGCTTGCGGCAGTGATCGCGGGGTGCGCGGCAGACTCTGATGCGAA
AACCATTAAAATCGGCATCAGCGGAACGGATACGAGAATTTGGGACTTTGTGAAGAAAAAAGCCGAAAAAGAAGGCTTAA
AGCTTGAAATCGTCAAATACTCCGACTATGTTCAGCCAAACCAGGCTTTGGCGAGCGGCGACATTGACGCCAACGCTTTT
CAGACGATATCCTACTTTAATGCATTCAAAAAGGAACGCAACCTTGAATTATCGCCGGTCGGCACAACGATCATCGCTCC
GATGGGCATTTATTCCGAGAAATATGATTCGCCTGGCGATATACCAAACGGCGCGGAAATTGCCGTTCCAAGCGAAGCGA
CGAACATGGGCAGAGCCTTGCTTCTGCTGGAGTCCGCCGGCCTGCTTCAATTAAAGGACGGATTTGACGGAAATGGAACG
CTTGATGCAATTAAAGAAAATCCTAAAAAACTCAAAATCACAACGGTGGCCGCAGAGCAAACGCCGCGCGTGCTTGCCGA
TGTCGCTGCATCCGTCATCAACAACGGCATAGCGGTTGACGCCGGCTTCCATCCTGTCAAAGATTCGATCAAACTGGAAG
ATGAAACAGCGACACCGTACATCAACATTATTGCGGCCAGAACAGAAGACCGGGATCGCGAAGATTTGAAAAAGATCGTC
GAGCTGTATCAAGCAGACGACACTGCTGAATTGATTAAAAAAGAATTTGACGGAGCACAGCTGCCGACTTTCGTTCCTCT
AAAAGACATCGGCGAATAA

Upstream 100 bases:

>100_bases
GGTTGCAATTCTCGTCATCGTAGTGCAAGGATTGCAGACATCCGGAAACGTTCTGTCAAAAAAATTGAGAAGAAGATAGA
CAGAGAGGGAGACGGCTATT

Downstream 100 bases:

>100_bases
AATGTCAGTCGCGCAATTGCTTCCCGGGTCATATATTGAAATACATCGATAATTCCTACTTGACCAATCAGGTTTGTTGT
ACTATAGTTTTTAAATGTAA

Product: YhcJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MKKFACVVIFLLLAAVIAGCAADSDAKTIKIGISGTDTRIWDFVKKKAEKEGLKLEIVKYSDYVQPNQALASGDIDANAF
QTISYFNAFKKERNLELSPVGTTIIAPMGIYSEKYDSPGDIPNGAEIAVPSEATNMGRALLLLESAGLLQLKDGFDGNGT
LDAIKENPKKLKITTVAAEQTPRVLADVAASVINNGIAVDAGFHPVKDSIKLEDETATPYINIIAARTEDRDREDLKKIV
ELYQADDTAELIKKEFDGAQLPTFVPLKDIGE

Sequences:

>Translated_272_residues
MKKFACVVIFLLLAAVIAGCAADSDAKTIKIGISGTDTRIWDFVKKKAEKEGLKLEIVKYSDYVQPNQALASGDIDANAF
QTISYFNAFKKERNLELSPVGTTIIAPMGIYSEKYDSPGDIPNGAEIAVPSEATNMGRALLLLESAGLLQLKDGFDGNGT
LDAIKENPKKLKITTVAAEQTPRVLADVAASVINNGIAVDAGFHPVKDSIKLEDETATPYINIIAARTEDRDREDLKKIV
ELYQADDTAELIKKEFDGAQLPTFVPLKDIGE
>Mature_272_residues
MKKFACVVIFLLLAAVIAGCAADSDAKTIKIGISGTDTRIWDFVKKKAEKEGLKLEIVKYSDYVQPNQALASGDIDANAF
QTISYFNAFKKERNLELSPVGTTIIAPMGIYSEKYDSPGDIPNGAEIAVPSEATNMGRALLLLESAGLLQLKDGFDGNGT
LDAIKENPKKLKITTVAAEQTPRVLADVAASVINNGIAVDAGFHPVKDSIKLEDETATPYINIIAARTEDRDREDLKKIV
ELYQADDTAELIKKEFDGAQLPTFVPLKDIGE

Specific function: Unknown

COG id: COG1464

COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface antigen

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpA lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1786396, Length=264, Percent_Identity=41.6666666666667, Blast_Score=188, Evalue=3e-49,
Organism=Escherichia coli, GI1790093, Length=247, Percent_Identity=36.4372469635627, Blast_Score=154, Evalue=7e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004872 [H]

Pfam domain/function: PF03180 Lipoprotein_9 [H]

EC number: NA

Molecular weight: Translated: 29437; Mature: 29437

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFACVVIFLLLAAVIAGCAADSDAKTIKIGISGTDTRIWDFVKKKAEKEGLKLEIVKY
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEC
SDYVQPNQALASGDIDANAFQTISYFNAFKKERNLELSPVGTTIIAPMGIYSEKYDSPGD
CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCHHHCCCCCCC
IPNGAEIAVPSEATNMGRALLLLESAGLLQLKDGFDGNGTLDAIKENPKKLKITTVAAEQ
CCCCCEEEECCCHHHCCEEEEEEECCCEEEEECCCCCCCCCHHHHCCCCEEEEEEEECCC
TPRVLADVAASVINNGIAVDAGFHPVKDSIKLEDETATPYINIIAARTEDRDREDLKKIV
CHHHHHHHHHHHHCCCEEEECCCCCCCCCEEECCCCCCCEEEEEEECCCCCCHHHHHHHH
ELYQADDTAELIKKEFDGAQLPTFVPLKDIGE
HHHCCCCHHHHHHHHCCCCCCCEECCHHHCCC
>Mature Secondary Structure
MKKFACVVIFLLLAAVIAGCAADSDAKTIKIGISGTDTRIWDFVKKKAEKEGLKLEIVKY
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEC
SDYVQPNQALASGDIDANAFQTISYFNAFKKERNLELSPVGTTIIAPMGIYSEKYDSPGD
CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCHHHCCCCCCC
IPNGAEIAVPSEATNMGRALLLLESAGLLQLKDGFDGNGTLDAIKENPKKLKITTVAAEQ
CCCCCEEEECCCHHHCCEEEEEEECCCEEEEECCCCCCCCCHHHHCCCCEEEEEEEECCC
TPRVLADVAASVINNGIAVDAGFHPVKDSIKLEDETATPYINIIAARTEDRDREDLKKIV
CHHHHHHHHHHHHCCCEEEECCCCCCCCCEEECCCCCCCEEEEEEECCCCCCHHHHHHHH
ELYQADDTAELIKKEFDGAQLPTFVPLKDIGE
HHHCCCCHHHHHHHHCCCCCCCEECCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]