Click here to switch to the map view.

The map label for this gene is ydeP [H]

Identifier: 52784611

GI number: 52784611

Start: 830899

End: 831291

Strand: Reverse

Name: ydeP [H]

Synonym: BLi00812

Alternate gene names: 52784611

Gene position: 831291-830899 (Counterclockwise)

Preceding gene: 52784613

Following gene: 52784605

Centisome position: 19.69

GC content: 51.15

Gene sequence:

>393_bases
ATGAAAAAACATCCGGCAGCATGCGAAGCACCGGACGGTTATTCATGTCCGGTGGAAGCAACGATCGATATCATCGGCGG
CAAATGGAAAAGCGTCATTCTGTATCACTTGATCGATGATAAAAAACGCTTTAATGAACTGCGGCGCTTAATTCCCGGCG
TGACTCAGCGGATGCTGACCCTCCAGCTTCGAGAGCTTGAGCGCGACGGCATCGTCTGCCGTACAATTTACAAACAGGTT
CCTCCGAAAGTCGAGTACAGTTTAACCGAGTTCGGCAAGACGCTGATCCCGATCATCCGGCAAATGATGAATTGGGGAAC
GTCCTACGCCGGCAAAATCAAGGAAGCGCGCCAAAGATCGGCAGCCGCTGAAAAACTGGAATCGCAAGGCTAA

Upstream 100 bases:

>100_bases
TATTCCTTTCTCAATTTCATTCTAATCATTATAATAGCAATAAGAAAGTACGCACATTTTTGTGGCATAGTATCATTTTT
TATACTAAGGAGAGAAGAAA

Downstream 100 bases:

>100_bases
TTGGCCGGCTCGATTTTCAAGATAAAGTCTTTGATTTTATTTAAGTATTCCTCAGGATTGTGGCGAAATCCGCCGACATG
TCCGGCGCCTTCAATCCAGT

Product: YdeP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MKKHPAACEAPDGYSCPVEATIDIIGGKWKSVILYHLIDDKKRFNELRRLIPGVTQRMLTLQLRELERDGIVCRTIYKQV
PPKVEYSLTEFGKTLIPIIRQMMNWGTSYAGKIKEARQRSAAAEKLESQG

Sequences:

>Translated_130_residues
MKKHPAACEAPDGYSCPVEATIDIIGGKWKSVILYHLIDDKKRFNELRRLIPGVTQRMLTLQLRELERDGIVCRTIYKQV
PPKVEYSLTEFGKTLIPIIRQMMNWGTSYAGKIKEARQRSAAAEKLESQG
>Mature_130_residues
MKKHPAACEAPDGYSCPVEATIDIIGGKWKSVILYHLIDDKKRFNELRRLIPGVTQRMLTLQLRELERDGIVCRTIYKQV
PPKVEYSLTEFGKTLIPIIRQMMNWGTSYAGKIKEARQRSAAAEKLESQG

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=90, Percent_Identity=37.7777777777778, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14834; Mature: 14834

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHPAACEAPDGYSCPVEATIDIIGGKWKSVILYHLIDDKKRFNELRRLIPGVTQRMLT
CCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQLRELERDGIVCRTIYKQVPPKVEYSLTEFGKTLIPIIRQMMNWGTSYAGKIKEARQRS
HHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AAAEKLESQG
HHHHHHHCCC
>Mature Secondary Structure
MKKHPAACEAPDGYSCPVEATIDIIGGKWKSVILYHLIDDKKRFNELRRLIPGVTQRMLT
CCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQLRELERDGIVCRTIYKQVPPKVEYSLTEFGKTLIPIIRQMMNWGTSYAGKIKEARQRS
HHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AAAEKLESQG
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]