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The map label for this gene is ydcA [H]

Identifier: 52784369

GI number: 52784369

Start: 555781

End: 556380

Strand: Reverse

Name: ydcA [H]

Synonym: BLi00549

Alternate gene names: 52784369

Gene position: 556380-555781 (Counterclockwise)

Preceding gene: 52784383

Following gene: 52784362

Centisome position: 13.18

GC content: 47.0

Gene sequence:

>600_bases
ATGTTTATCAGAACAGAAAATTTTCAGACGTTTATCAGGCTCTACCCGGTCACATCCGCCATATTGGCCCTGCAGCTTGC
CATTTGGATTCTTTTTTTATTTCCGTTTACGGCCGTACAGATGTGGTCTGATTTATTGATTGGCTTTAACTGGGGAATAG
CGAACGGAGAATGGTGGAGGTTTGTGACGCCAATCTTTATTCACGCCGGTTTCGGCCACCTGCTCTTTAATTCGATGTCG
ATCTTTTTGTTTGCCCCCGGGCTGGAACGAATGCTCGGGAAACTCAAGTTTCTCATCGTTTATATCGGAGCAGGAGTGAT
TGGCAATATCGGCACATATTTCATCGAACCGCTGGAGTATATGCATGTCGGCGCTTCGGGAGCCATTTTCGGCTTGTTCG
GCGTGTACCTGTACATCGTGCTGTTTAGAAAAGAGCTGATGGGGAGCGCCAATTCCCAAATCATCGTCACCATCCTCGCC
ATTTCGGTTTTGATGACGTTTGTAAACCAAAATATCAATATGATGGCGCACATCTTCGGTCTGCTGGGCGGACTCGCCTT
GGCTCCGCCATTGTTAAACAAAAGAGTGAACGGCTTTTAA

Upstream 100 bases:

>100_bases
TCCAAAATCATTTTCTCGTCCGTACTAATCGCCGCTGCCTGTTCATAAACGTGTTACTATATATGTACGAGATCATTGTA
AAGGGGCTTAAATCATAAGC

Downstream 100 bases:

>100_bases
CCGTTCACTCTTTTTTCATATGAATACCATGCAATGATATCGTCCGAATCTTTCTCCTCAACATCAGCCACCGAAAACTT
CTCCATTAAAACAGACGATT

Product: YdcA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MFIRTENFQTFIRLYPVTSAILALQLAIWILFLFPFTAVQMWSDLLIGFNWGIANGEWWRFVTPIFIHAGFGHLLFNSMS
IFLFAPGLERMLGKLKFLIVYIGAGVIGNIGTYFIEPLEYMHVGASGAIFGLFGVYLYIVLFRKELMGSANSQIIVTILA
ISVLMTFVNQNINMMAHIFGLLGGLALAPPLLNKRVNGF

Sequences:

>Translated_199_residues
MFIRTENFQTFIRLYPVTSAILALQLAIWILFLFPFTAVQMWSDLLIGFNWGIANGEWWRFVTPIFIHAGFGHLLFNSMS
IFLFAPGLERMLGKLKFLIVYIGAGVIGNIGTYFIEPLEYMHVGASGAIFGLFGVYLYIVLFRKELMGSANSQIIVTILA
ISVLMTFVNQNINMMAHIFGLLGGLALAPPLLNKRVNGF
>Mature_199_residues
MFIRTENFQTFIRLYPVTSAILALQLAIWILFLFPFTAVQMWSDLLIGFNWGIANGEWWRFVTPIFIHAGFGHLLFNSMS
IFLFAPGLERMLGKLKFLIVYIGAGVIGNIGTYFIEPLEYMHVGASGAIFGLFGVYLYIVLFRKELMGSANSQIIVTILA
ISVLMTFVNQNINMMAHIFGLLGGLALAPPLLNKRVNGF

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S54 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002610
- InterPro:   IPR022764 [H]

Pfam domain/function: PF01694 Rhomboid [H]

EC number: NA

Molecular weight: Translated: 22337; Mature: 22337

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIRTENFQTFIRLYPVTSAILALQLAIWILFLFPFTAVQMWSDLLIGFNWGIANGEWWR
CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
FVTPIFIHAGFGHLLFNSMSIFLFAPGLERMLGKLKFLIVYIGAGVIGNIGTYFIEPLEY
HHHHHHHHCCHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
MHVGASGAIFGLFGVYLYIVLFRKELMGSANSQIIVTILAISVLMTFVNQNINMMAHIFG
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LLGGLALAPPLLNKRVNGF
HHHHHHHCCHHHHHCCCCC
>Mature Secondary Structure
MFIRTENFQTFIRLYPVTSAILALQLAIWILFLFPFTAVQMWSDLLIGFNWGIANGEWWR
CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
FVTPIFIHAGFGHLLFNSMSIFLFAPGLERMLGKLKFLIVYIGAGVIGNIGTYFIEPLEY
HHHHHHHHCCHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
MHVGASGAIFGLFGVYLYIVLFRKELMGSANSQIIVTILAISVLMTFVNQNINMMAHIFG
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LLGGLALAPPLLNKRVNGF
HHHHHHHCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]