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The map label for this gene is ydbP [H]

Identifier: 52784362

GI number: 52784362

Start: 548056

End: 548376

Strand: Reverse

Name: ydbP [H]

Synonym: BLi00542

Alternate gene names: 52784362

Gene position: 548376-548056 (Counterclockwise)

Preceding gene: 52784369

Following gene: 52784361

Centisome position: 12.99

GC content: 42.68

Gene sequence:

>321_bases
TTGAAAAAAATCACAACAGAAGCGCAATTTAATGAATTGATCCAATCCGATAAAGAAATCATCGTCAAATTTTACGCTGA
CTGGTGCCCGGACTGCACACGCATGAACATGTTCATCGGAGACATTCTTGAGGCTTATCAGGAAAATGACTGGTATGAGC
TGAATAAAGACGACCTTCCTGAACTTGCCGACAAGTACCAGGTCATGGGCATTCCAAGCCTGTTGATTTTCAAAAACGGC
GAAAAAACGGGACACCTTCACAGCGCAAATGCCAAAACGCCTGAAGAAGTGAATGAATTCCTGGCTGAACATATTAGCTA
A

Upstream 100 bases:

>100_bases
TAATTATTTTAATACGGTCTAAAAACAGCATATAAAAAGCATTTGTATGTAAATCCTTTTCATTTTATATTAAAATGGCA
TTGAAAAGGAGAGGTTGCAA

Downstream 100 bases:

>100_bases
TTCGTTTAAAGTCCTGATTTTTTGTCTGAACCGCCGGACATGGGAGCACCCCCATGTCCTTTTTATACAAGACGGGACAG
CAGCAAAATTTGTTTCATAA

Product: YdbP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 106

Protein sequence:

>106_residues
MKKITTEAQFNELIQSDKEIIVKFYADWCPDCTRMNMFIGDILEAYQENDWYELNKDDLPELADKYQVMGIPSLLIFKNG
EKTGHLHSANAKTPEEVNEFLAEHIS

Sequences:

>Translated_106_residues
MKKITTEAQFNELIQSDKEIIVKFYADWCPDCTRMNMFIGDILEAYQENDWYELNKDDLPELADKYQVMGIPSLLIFKNG
EKTGHLHSANAKTPEEVNEFLAEHIS
>Mature_106_residues
MKKITTEAQFNELIQSDKEIIVKFYADWCPDCTRMNMFIGDILEAYQENDWYELNKDDLPELADKYQVMGIPSLLIFKNG
EKTGHLHSANAKTPEEVNEFLAEHIS

Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]

COG id: COG0526

COG function: function code OC; Thiol-disulfide isomerase and thioredoxins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI95113651, Length=88, Percent_Identity=29.5454545454545, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI87082331, Length=104, Percent_Identity=32.6923076923077, Blast_Score=60, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323072, Length=99, Percent_Identity=34.3434343434343, Blast_Score=72, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6319925, Length=96, Percent_Identity=26.0416666666667, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 12315; Mature: 12315

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKITTEAQFNELIQSDKEIIVKFYADWCPDCTRMNMFIGDILEAYQENDWYELNKDDLP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEECCCCCHH
ELADKYQVMGIPSLLIFKNGEKTGHLHSANAKTPEEVNEFLAEHIS
HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKKITTEAQFNELIQSDKEIIVKFYADWCPDCTRMNMFIGDILEAYQENDWYELNKDDLP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEECCCCCHH
ELADKYQVMGIPSLLIFKNGEKTGHLHSANAKTPEEVNEFLAEHIS
HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Reduction reactions; participates in dithiol-disulfide exchange reactions [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]