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The map label for this gene is ysfD [H]

Identifier: 52784152

GI number: 52784152

Start: 304462

End: 305784

Strand: Reverse

Name: ysfD [H]

Synonym: BLi00329

Alternate gene names: 52784152

Gene position: 305784-304462 (Counterclockwise)

Preceding gene: 52784153

Following gene: 52784150

Centisome position: 7.24

GC content: 51.17

Gene sequence:

>1323_bases
ATGACGACAGCTGACGAAAGAAAGGTCATTGAACAGCAGTTTAAACAAAGAATGGATGAGGAAGAGCTGCTGAATTGCAT
GCGCTGCGGCTTCTGTCTGCCGTCATGCCCCACCTACATCGAATCCGGTTTTCAAGAAAGCCATTCTCCGCGCGGACGCA
TCGCGCTCATGAAAGCGGTCGTCGATGGGACGATCGAGCCTGATGAGGATGTCGAACGGTCACTCGAGCTTTGCCTCGGC
TGCCGCGCGTGTGAACCTGTTTGTCCGTCAGGCGTAAACTACGGACGCTTGCTTGAAGAAGCGAGAGATATTATTCAGCA
GAACAAAAAGCACGCCTTTCCGGTTAAAGTGCTTCGCCGCGCAGTATTCAAAGGGCTTTTCCCCCATCCAAACAGAATCA
GGGCGCTGACCGGAATGCTCGGCTTGTATCAGCGTTCCGGCATGCAAAACGTGATTCGCAAATCCGGCTTGCTCCGGCTT
TTGCCGGACCACCTCGCGAAGATGGAGGCGGTTTTGCCGAAGGTTCCTAATATGAAACAGCTGAAAAAACGGCCGCACCT
GCTCCCTGCGATCGGGGAGAGAAAAAAACGGGCCGCCTTTTTCTCAGGCTGTCTCATGGATACGCTGTTTTTGGATACGA
ATATGGCAACCATTGAGCTGCTGCGGCTGGCTGGCTGCGAGATCATAATTCCCGAACAGCAGACCTGCTGCGGCGCCCTC
CACGGACACAGCAGCGAAAAGTCTGAGGCCATCCTGCTCGCAAAACGAAATATTCAGGCATTCGAGGATTCAAACGCGGA
CTTTATCATAACAAATGCAGGCGGATGCGGAGCTTTTTTAAAGGAATATGATCATCTCCTGAAAGATGACTCCGAATGGC
GGGAACGGGCAGCATCTTTCACAGGAAAATTGAAAGACTTTTCTTCCGTCTTGTTGGAACTGAACTTCGATCAGCAATCC
CTTGAACTGCCGGAGCAAATCGTCACATACCAAGATTCGTGCCATTTGCGAAATGTCATGAAAACGTCCGCTGAGCCGAG
ACGCCTTATTCGCAGCATCAAGGGCATTGAATTCAAGGAAATGAAAAATGCCGAAAGCTGCTGTGGATCAGCCGGCATTT
ATAACATTGTCGAATCCGAAATGTCGATGAAAATTCTCGATACTAAAATGGAAGCAGCAGCAGCGACCCGGGCCGCTACG
ATCGTTACGGCTAATCCCGGATGTCTGCTGCAAATGAAGCTCGGCATTGAACGAGCAGGACTTACAGACCGAGTGAGAGC
CGTTCATCTGGCGGATTTATTACTGGAAGCCGTCCAGAAGTGA

Upstream 100 bases:

>100_bases
CCGCCATGAAGGCGGTAAAACAGGCATTGGATCCAAACAACATCATGAATCCCGGGAAGATATTTGCGAAAGACTCCCGC
AAGCGAGTGGTGGTGACAAG

Downstream 100 bases:

>100_bases
CCAGACTGGCTCACACCTGTATATTTCTCGGGAAATAAATCGAAATATGTCCTTTGCTGCTATTTCCGGACAGCAGGAAA
TTCTCCATTCGGCTGGATGA

Product: YsfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MTTADERKVIEQQFKQRMDEEELLNCMRCGFCLPSCPTYIESGFQESHSPRGRIALMKAVVDGTIEPDEDVERSLELCLG
CRACEPVCPSGVNYGRLLEEARDIIQQNKKHAFPVKVLRRAVFKGLFPHPNRIRALTGMLGLYQRSGMQNVIRKSGLLRL
LPDHLAKMEAVLPKVPNMKQLKKRPHLLPAIGERKKRAAFFSGCLMDTLFLDTNMATIELLRLAGCEIIIPEQQTCCGAL
HGHSSEKSEAILLAKRNIQAFEDSNADFIITNAGGCGAFLKEYDHLLKDDSEWRERAASFTGKLKDFSSVLLELNFDQQS
LELPEQIVTYQDSCHLRNVMKTSAEPRRLIRSIKGIEFKEMKNAESCCGSAGIYNIVESEMSMKILDTKMEAAAATRAAT
IVTANPGCLLQMKLGIERAGLTDRVRAVHLADLLLEAVQK

Sequences:

>Translated_440_residues
MTTADERKVIEQQFKQRMDEEELLNCMRCGFCLPSCPTYIESGFQESHSPRGRIALMKAVVDGTIEPDEDVERSLELCLG
CRACEPVCPSGVNYGRLLEEARDIIQQNKKHAFPVKVLRRAVFKGLFPHPNRIRALTGMLGLYQRSGMQNVIRKSGLLRL
LPDHLAKMEAVLPKVPNMKQLKKRPHLLPAIGERKKRAAFFSGCLMDTLFLDTNMATIELLRLAGCEIIIPEQQTCCGAL
HGHSSEKSEAILLAKRNIQAFEDSNADFIITNAGGCGAFLKEYDHLLKDDSEWRERAASFTGKLKDFSSVLLELNFDQQS
LELPEQIVTYQDSCHLRNVMKTSAEPRRLIRSIKGIEFKEMKNAESCCGSAGIYNIVESEMSMKILDTKMEAAAATRAAT
IVTANPGCLLQMKLGIERAGLTDRVRAVHLADLLLEAVQK
>Mature_439_residues
TTADERKVIEQQFKQRMDEEELLNCMRCGFCLPSCPTYIESGFQESHSPRGRIALMKAVVDGTIEPDEDVERSLELCLGC
RACEPVCPSGVNYGRLLEEARDIIQQNKKHAFPVKVLRRAVFKGLFPHPNRIRALTGMLGLYQRSGMQNVIRKSGLLRLL
PDHLAKMEAVLPKVPNMKQLKKRPHLLPAIGERKKRAAFFSGCLMDTLFLDTNMATIELLRLAGCEIIIPEQQTCCGALH
GHSSEKSEAILLAKRNIQAFEDSNADFIITNAGGCGAFLKEYDHLLKDDSEWRERAASFTGKLKDFSSVLLELNFDQQSL
ELPEQIVTYQDSCHLRNVMKTSAEPRRLIRSIKGIEFKEMKNAESCCGSAGIYNIVESEMSMKILDTKMEAAAATRAATI
VTANPGCLLQMKLGIERAGLTDRVRAVHLADLLLEAVQK

Specific function: Unknown

COG id: COG0247

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI48994913, Length=418, Percent_Identity=31.1004784688995, Blast_Score=192, Evalue=4e-50,
Organism=Escherichia coli, GI1786497, Length=237, Percent_Identity=30.379746835443, Blast_Score=116, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004017
- InterPro:   IPR012285
- InterPro:   IPR012257 [H]

Pfam domain/function: PF02754 CCG [H]

EC number: NA

Molecular weight: Translated: 49214; Mature: 49083

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTADERKVIEQQFKQRMDEEELLNCMRCGFCLPSCPTYIESGFQESHSPRGRIALMKAV
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
VDGTIEPDEDVERSLELCLGCRACEPVCPSGVNYGRLLEEARDIIQQNKKHAFPVKVLRR
HCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
AVFKGLFPHPNRIRALTGMLGLYQRSGMQNVIRKSGLLRLLPDHLAKMEAVLPKVPNMKQ
HHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHH
LKKRPHLLPAIGERKKRAAFFSGCLMDTLFLDTNMATIELLRLAGCEIIIPEQQTCCGAL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCHHHHHHH
HGHSSEKSEAILLAKRNIQAFEDSNADFIITNAGGCGAFLKEYDHLLKDDSEWRERAASF
HCCCCCCCCEEEEECCCCHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHH
TGKLKDFSSVLLELNFDQQSLELPEQIVTYQDSCHLRNVMKTSAEPRRLIRSIKGIEFKE
HHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHH
MKNAESCCGSAGIYNIVESEMSMKILDTKMEAAAATRAATIVTANPGCLLQMKLGIERAG
HCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCCC
LTDRVRAVHLADLLLEAVQK
CHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTADERKVIEQQFKQRMDEEELLNCMRCGFCLPSCPTYIESGFQESHSPRGRIALMKAV
CCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
VDGTIEPDEDVERSLELCLGCRACEPVCPSGVNYGRLLEEARDIIQQNKKHAFPVKVLRR
HCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
AVFKGLFPHPNRIRALTGMLGLYQRSGMQNVIRKSGLLRLLPDHLAKMEAVLPKVPNMKQ
HHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHH
LKKRPHLLPAIGERKKRAAFFSGCLMDTLFLDTNMATIELLRLAGCEIIIPEQQTCCGAL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCHHHHHHH
HGHSSEKSEAILLAKRNIQAFEDSNADFIITNAGGCGAFLKEYDHLLKDDSEWRERAASF
HCCCCCCCCEEEEECCCCHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHH
TGKLKDFSSVLLELNFDQQSLELPEQIVTYQDSCHLRNVMKTSAEPRRLIRSIKGIEFKE
HHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHH
MKNAESCCGSAGIYNIVESEMSMKILDTKMEAAAATRAATIVTANPGCLLQMKLGIERAG
HCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCCC
LTDRVRAVHLADLLLEAVQK
CHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]