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The map label for this gene is ycdA [H]

Identifier: 52784144

GI number: 52784144

Start: 293621

End: 294697

Strand: Reverse

Name: ycdA [H]

Synonym: BLi00321

Alternate gene names: 52784144

Gene position: 294697-293621 (Counterclockwise)

Preceding gene: 52784145

Following gene: 52784140

Centisome position: 6.98

GC content: 39.09

Gene sequence:

>1077_bases
ATGCGAAGTAAAAAGTTTTTTCTGATGATGCTTTTGATGATTGTAGCAGTCGTGTCAACAGCCTGCGGAGGCAGCAAAAG
CGCGAGCGGAGAGAAAGAAGATACGAAAAAAGCAGATAATGCAGAAGTTAAAATCCTAAGCTCCGAATATACGCTTCCTG
ATGATTCATCAACAAACCTGCACGAAAATGAACTTATACTAAAGATCAATGTTTCCGTGAAAAATACAGGGAAAGAACCA
TTAATGGTTGATAAAAGCCAATTCAGCCTTTACGAAGGCGACTCAAAAATGTCGGACGTCAGCGTATATGATGAAAGAAA
CAAAAGGCTTCGCTCTTCGACGCTGAATTCTGACAAAGAAGTCGACGGAAATATCTATTACATCGTTGAAAAAGGCAAAA
AGTTTCAGCTTGAATACACACCTGACATGTACGGTGAAAATAAAGCCGATCCTGTCAAATTCGAGATCGACGGCGGCAGC
GACGAATTACTGAAAACGGCCAAAAAACTTGAAGATCCGGCAAAAGCTTTGCTAGCTTACACAGACGTAACGATTTTCGG
CAAAGACAATAATAACTTTGATAAACTGGTCGACGAAAACAAACGTGAAGTCGTTACCGATTACCTTGAAGGCGCTCAAA
AATCTATCGTTCGCTCTTTAGGATATTATGATGAAGAAGATGTGGATAAAAAGAAATTGAATAAACTGATCAGCGCCATC
CAAAACGCCTATCAAGAAAAATCTCAAGTCAAAGCAGTTACAAAATCAATTTCAGGCGATGAAGCAACTGTTGAGGCAAC
CGTTACGCCAATCGATAATACAGATGTCCAAAAGAAAGTGAAGAAAAGACTGGAAGACTATGTGAAAGACAGCGGCAAAG
ACTTCATGTCCAGAGATGAATTGATCAATCCTGCGATTGACATCATGAGTGAAGAAATCAAAAAAGCAGAGGCGACTTCA
AGTGAGAAAACCGTTGAAGTCAAACTTGAAAAATCAAAAAATGACAAATGGAAAATTGATGCTGATAATTACAAGACCGA
ACAATACTTCTCAAGCTTCCTTAAAAGCAACAACTAA

Upstream 100 bases:

>100_bases
TTGAGTAAGATTTGTCCCGATGAAGGGCCTTTATGCCCTGGCCGCCTCATTCTTTTCATTTACATAACATTGAAAAAAAT
AATAAAAAAGGAGACAGACC

Downstream 100 bases:

>100_bases
AAAAAGCACCCTAGAGGTGCTTTTTTTCAATTACAATAAAACAAGTGCTGTCCGGCAGCGGCACACGCCGGCCGAGCCGG
TCTGTCAGCTCGATTTTAGG

Product: YcdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MRSKKFFLMMLLMIVAVVSTACGGSKSASGEKEDTKKADNAEVKILSSEYTLPDDSSTNLHENELILKINVSVKNTGKEP
LMVDKSQFSLYEGDSKMSDVSVYDERNKRLRSSTLNSDKEVDGNIYYIVEKGKKFQLEYTPDMYGENKADPVKFEIDGGS
DELLKTAKKLEDPAKALLAYTDVTIFGKDNNNFDKLVDENKREVVTDYLEGAQKSIVRSLGYYDEEDVDKKKLNKLISAI
QNAYQEKSQVKAVTKSISGDEATVEATVTPIDNTDVQKKVKKRLEDYVKDSGKDFMSRDELINPAIDIMSEEIKKAEATS
SEKTVEVKLEKSKNDKWKIDADNYKTEQYFSSFLKSNN

Sequences:

>Translated_358_residues
MRSKKFFLMMLLMIVAVVSTACGGSKSASGEKEDTKKADNAEVKILSSEYTLPDDSSTNLHENELILKINVSVKNTGKEP
LMVDKSQFSLYEGDSKMSDVSVYDERNKRLRSSTLNSDKEVDGNIYYIVEKGKKFQLEYTPDMYGENKADPVKFEIDGGS
DELLKTAKKLEDPAKALLAYTDVTIFGKDNNNFDKLVDENKREVVTDYLEGAQKSIVRSLGYYDEEDVDKKKLNKLISAI
QNAYQEKSQVKAVTKSISGDEATVEATVTPIDNTDVQKKVKKRLEDYVKDSGKDFMSRDELINPAIDIMSEEIKKAEATS
SEKTVEVKLEKSKNDKWKIDADNYKTEQYFSSFLKSNN
>Mature_358_residues
MRSKKFFLMMLLMIVAVVSTACGGSKSASGEKEDTKKADNAEVKILSSEYTLPDDSSTNLHENELILKINVSVKNTGKEP
LMVDKSQFSLYEGDSKMSDVSVYDERNKRLRSSTLNSDKEVDGNIYYIVEKGKKFQLEYTPDMYGENKADPVKFEIDGGS
DELLKTAKKLEDPAKALLAYTDVTIFGKDNNNFDKLVDENKREVVTDYLEGAQKSIVRSLGYYDEEDVDKKKLNKLISAI
QNAYQEKSQVKAVTKSISGDEATVEATVTPIDNTDVQKKVKKRLEDYVKDSGKDFMSRDELINPAIDIMSEEIKKAEATS
SEKTVEVKLEKSKNDKWKIDADNYKTEQYFSSFLKSNN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015250
- InterPro:   IPR021652 [H]

Pfam domain/function: PF11611 TRF2 [H]

EC number: NA

Molecular weight: Translated: 40406; Mature: 40406

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSKKFFLMMLLMIVAVVSTACGGSKSASGEKEDTKKADNAEVKILSSEYTLPDDSSTNL
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCC
HENELILKINVSVKNTGKEPLMVDKSQFSLYEGDSKMSDVSVYDERNKRLRSSTLNSDKE
CCCEEEEEEEEEEECCCCCCEEEECCHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
VDGNIYYIVEKGKKFQLEYTPDMYGENKADPVKFEIDGGSDELLKTAKKLEDPAKALLAY
CCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCHHHHHHHHH
TDVTIFGKDNNNFDKLVDENKREVVTDYLEGAQKSIVRSLGYYDEEDVDKKKLNKLISAI
EEEEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
QNAYQEKSQVKAVTKSISGDEATVEATVTPIDNTDVQKKVKKRLEDYVKDSGKDFMSRDE
HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
LINPAIDIMSEEIKKAEATSSEKTVEVKLEKSKNDKWKIDADNYKTEQYFSSFLKSNN
HCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEECCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRSKKFFLMMLLMIVAVVSTACGGSKSASGEKEDTKKADNAEVKILSSEYTLPDDSSTNL
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCC
HENELILKINVSVKNTGKEPLMVDKSQFSLYEGDSKMSDVSVYDERNKRLRSSTLNSDKE
CCCEEEEEEEEEEECCCCCCEEEECCHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
VDGNIYYIVEKGKKFQLEYTPDMYGENKADPVKFEIDGGSDELLKTAKKLEDPAKALLAY
CCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCHHHHHHHHH
TDVTIFGKDNNNFDKLVDENKREVVTDYLEGAQKSIVRSLGYYDEEDVDKKKLNKLISAI
EEEEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
QNAYQEKSQVKAVTKSISGDEATVEATVTPIDNTDVQKKVKKRLEDYVKDSGKDFMSRDE
HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
LINPAIDIMSEEIKKAEATSSEKTVEVKLEKSKNDKWKIDADNYKTEQYFSSFLKSNN
HCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEECCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377 [H]