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The map label for this gene is ybgF [H]

Identifier: 52784089

GI number: 52784089

Start: 237468

End: 238922

Strand: Reverse

Name: ybgF [H]

Synonym: BLi00265

Alternate gene names: 52784089

Gene position: 238922-237468 (Counterclockwise)

Preceding gene: 52784090

Following gene: 52784088

Centisome position: 5.66

GC content: 49.9

Gene sequence:

>1455_bases
ATGGAACAGTCAAACACCAATCGCCAGAACTTTCAAAGAAAAATGCAAACGAGACACCTTATCATGCTTTCCTTAGGAGG
CGTTATCGGCACGGGCCTTTTCTTAAGTTCCGGTTATACGATCTCACAGGCTGGTCCTGCCGGAACGATTCTAGCCTACT
TGGCCGGGGCTCTGATCGTCTACCTTGTCATGCTCTGCCTCGGCGAATTATCGGTCGCCATGCCTGTCACCGGATCGTTT
CATATGTACGCCTCCAGATTCATCGGGCCGGGCACCGGATTCACCGTCGCCTGGCTATACTGGCTGACCTGGGCTGTCGC
GCTCGGTTCGGAATTTACCGCTGCCGGGTTATTAATGCAGCGCTGGTTCCCCGATACTTCAGTCTGGATGTGGAGCGCGG
TATTCGCTGCACTGATTTTCGCGCTCAATGCTGTCTCAGTGAGATTTTTCGCCGAATCCGAATTTTGGTTTTCAAGCATT
AAAGTGCTTGCCATTATATTGTTTATTATATTAGGAGGAGCGGCGATATTCGGCATCATCCCGATACAAAATGCAGACGC
TGCACCGCTTCTTTCAAACTTTGCAGGAGAAGGCGGTCTCTTTCCAAACGGCTTCCTTCCAATTTTTATGGCGATGCTCT
CCGTGAATTTTGCGTTTTCGGGTACGGAGCTGATCGGAATTGCCGCCGGAGAAAGCGCCGAACCGGAAAAGAACATTCCA
AAAGCGATCAAGACAACACTCTGGAGACTGGTGCTTTTCTTCATCGGAACGATTTTCGTGCTTTCGTGCCTCATTCCGGT
TAAAGAAGCCGGTGTGATCAAAAGCCCATTTGTCGACGTCTTTGACCGCATCGGTGTTCCATATGCGGCCGACATCATGA
ACTTTGTAATTCTGACGGCTCTGCTTTCCGCGGCCAACTCAGGCTTGTATGCATGCTCCCGGATGCTCTGGTCACTGTCA
AAAGAAAAAACTTTGCACCCCGTATTTCAAAAGCTGACTTCACGGGGAATCCCGTTGAACGCGCTGATCTTCAGCATGCT
CGGCGGCATTCTGTCGCTGCTCTCCAGCGTGTTTGCGCCTGATTCCGTCTACATCGTTCTTGTGTCGATTTCAGGGTTTG
CCGTTGTTGCTGTCTGGATGAGCATTGCGGCTTCGCAGTTCATGTTCCGCAGACGCTTTTTGGCTGAGGGAAACACCGCA
GACGACTTAAAATACCGGACACCGCTTTATCCGGCCGTACCGATTGCCGCTTTTCTGCTATGCCTGGCATCCTGCATTGG
CATTGCCTTTGATCCGAACCAAAGGATCGCCCTTTTTTGCGGTGTGCCGTTTATGGCGTTATGCTATACCATCTATTATG
CAACAAACCGAAAAAATAGCTGGAATCCGTCTGAGCCCGTTAAGAATGCAAGTTTGCATGTTTCATTTTCTGAATACGAG
GAAAAGAAAAACTAA

Upstream 100 bases:

>100_bases
GCTGGTATAACCAAGGGGCACAGCTGATCGGCGGCTGCTGCAGAACAACGCCTGAGGACATCAAAGCCGTCGCCGCCTGG
GCGAGAAAGCTGGAGGTATA

Downstream 100 bases:

>100_bases
AATCCCGTATAAAGGAGCGAATGGTTATGGAACATGTGAAAGCCCTTGCCATCAAAGGCATCATGACGATTGTGATTCTG
TACCTTGTTCTAGGGCTCGG

Product: YbgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MEQSNTNRQNFQRKMQTRHLIMLSLGGVIGTGLFLSSGYTISQAGPAGTILAYLAGALIVYLVMLCLGELSVAMPVTGSF
HMYASRFIGPGTGFTVAWLYWLTWAVALGSEFTAAGLLMQRWFPDTSVWMWSAVFAALIFALNAVSVRFFAESEFWFSSI
KVLAIILFIILGGAAIFGIIPIQNADAAPLLSNFAGEGGLFPNGFLPIFMAMLSVNFAFSGTELIGIAAGESAEPEKNIP
KAIKTTLWRLVLFFIGTIFVLSCLIPVKEAGVIKSPFVDVFDRIGVPYAADIMNFVILTALLSAANSGLYACSRMLWSLS
KEKTLHPVFQKLTSRGIPLNALIFSMLGGILSLLSSVFAPDSVYIVLVSISGFAVVAVWMSIAASQFMFRRRFLAEGNTA
DDLKYRTPLYPAVPIAAFLLCLASCIGIAFDPNQRIALFCGVPFMALCYTIYYATNRKNSWNPSEPVKNASLHVSFSEYE
EKKN

Sequences:

>Translated_484_residues
MEQSNTNRQNFQRKMQTRHLIMLSLGGVIGTGLFLSSGYTISQAGPAGTILAYLAGALIVYLVMLCLGELSVAMPVTGSF
HMYASRFIGPGTGFTVAWLYWLTWAVALGSEFTAAGLLMQRWFPDTSVWMWSAVFAALIFALNAVSVRFFAESEFWFSSI
KVLAIILFIILGGAAIFGIIPIQNADAAPLLSNFAGEGGLFPNGFLPIFMAMLSVNFAFSGTELIGIAAGESAEPEKNIP
KAIKTTLWRLVLFFIGTIFVLSCLIPVKEAGVIKSPFVDVFDRIGVPYAADIMNFVILTALLSAANSGLYACSRMLWSLS
KEKTLHPVFQKLTSRGIPLNALIFSMLGGILSLLSSVFAPDSVYIVLVSISGFAVVAVWMSIAASQFMFRRRFLAEGNTA
DDLKYRTPLYPAVPIAAFLLCLASCIGIAFDPNQRIALFCGVPFMALCYTIYYATNRKNSWNPSEPVKNASLHVSFSEYE
EKKN
>Mature_484_residues
MEQSNTNRQNFQRKMQTRHLIMLSLGGVIGTGLFLSSGYTISQAGPAGTILAYLAGALIVYLVMLCLGELSVAMPVTGSF
HMYASRFIGPGTGFTVAWLYWLTWAVALGSEFTAAGLLMQRWFPDTSVWMWSAVFAALIFALNAVSVRFFAESEFWFSSI
KVLAIILFIILGGAAIFGIIPIQNADAAPLLSNFAGEGGLFPNGFLPIFMAMLSVNFAFSGTELIGIAAGESAEPEKNIP
KAIKTTLWRLVLFFIGTIFVLSCLIPVKEAGVIKSPFVDVFDRIGVPYAADIMNFVILTALLSAANSGLYACSRMLWSLS
KEKTLHPVFQKLTSRGIPLNALIFSMLGGILSLLSSVFAPDSVYIVLVSISGFAVVAVWMSIAASQFMFRRRFLAEGNTA
DDLKYRTPLYPAVPIAAFLLCLASCIGIAFDPNQRIALFCGVPFMALCYTIYYATNRKNSWNPSEPVKNASLHVSFSEYE
EKKN

Specific function: Transporter For The Intake Of S-Methylmethionine. [C]

COG id: COG0833

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Homo sapiens, GI110347453, Length=357, Percent_Identity=25.7703081232493, Blast_Score=72, Evalue=2e-12,
Organism=Homo sapiens, GI258645169, Length=376, Percent_Identity=22.3404255319149, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI33286428, Length=346, Percent_Identity=24.5664739884393, Blast_Score=66, Evalue=9e-11,
Organism=Escherichia coli, GI87081708, Length=467, Percent_Identity=64.6680942184154, Blast_Score=620, Evalue=1e-179,
Organism=Escherichia coli, GI1788480, Length=438, Percent_Identity=43.37899543379, Blast_Score=358, Evalue=1e-100,
Organism=Escherichia coli, GI48994972, Length=467, Percent_Identity=36.1884368308351, Blast_Score=281, Evalue=6e-77,
Organism=Escherichia coli, GI1786302, Length=460, Percent_Identity=34.3478260869565, Blast_Score=273, Evalue=2e-74,
Organism=Escherichia coli, GI1786789, Length=413, Percent_Identity=37.772397094431, Blast_Score=268, Evalue=5e-73,
Organism=Escherichia coli, GI1786602, Length=454, Percent_Identity=35.6828193832599, Blast_Score=265, Evalue=4e-72,
Organism=Escherichia coli, GI1789017, Length=457, Percent_Identity=35.2297592997812, Blast_Score=262, Evalue=4e-71,
Organism=Escherichia coli, GI87081915, Length=486, Percent_Identity=31.8930041152263, Blast_Score=252, Evalue=3e-68,
Organism=Escherichia coli, GI1790653, Length=416, Percent_Identity=33.4134615384615, Blast_Score=238, Evalue=5e-64,
Organism=Saccharomyces cerevisiae, GI6320772, Length=471, Percent_Identity=31.6348195329087, Blast_Score=238, Evalue=1e-63,
Organism=Saccharomyces cerevisiae, GI6324061, Length=427, Percent_Identity=32.0843091334895, Blast_Score=228, Evalue=2e-60,
Organism=Saccharomyces cerevisiae, GI6321629, Length=417, Percent_Identity=31.4148681055156, Blast_Score=216, Evalue=7e-57,
Organism=Saccharomyces cerevisiae, GI6324553, Length=509, Percent_Identity=30.2554027504912, Blast_Score=211, Evalue=1e-55,
Organism=Saccharomyces cerevisiae, GI6324059, Length=428, Percent_Identity=32.7102803738318, Blast_Score=203, Evalue=4e-53,
Organism=Saccharomyces cerevisiae, GI6322892, Length=413, Percent_Identity=30.9927360774818, Blast_Score=201, Evalue=2e-52,
Organism=Saccharomyces cerevisiae, GI6324990, Length=471, Percent_Identity=28.4501061571125, Blast_Score=189, Evalue=7e-49,
Organism=Saccharomyces cerevisiae, GI6320717, Length=428, Percent_Identity=27.803738317757, Blast_Score=188, Evalue=1e-48,
Organism=Saccharomyces cerevisiae, GI6322967, Length=422, Percent_Identity=30.5687203791469, Blast_Score=184, Evalue=2e-47,
Organism=Saccharomyces cerevisiae, GI6319543, Length=449, Percent_Identity=28.0623608017817, Blast_Score=179, Evalue=9e-46,
Organism=Saccharomyces cerevisiae, GI6319824, Length=422, Percent_Identity=29.1469194312796, Blast_Score=178, Evalue=2e-45,
Organism=Saccharomyces cerevisiae, GI6319542, Length=424, Percent_Identity=28.5377358490566, Blast_Score=174, Evalue=3e-44,
Organism=Saccharomyces cerevisiae, GI6324981, Length=416, Percent_Identity=32.9326923076923, Blast_Score=174, Evalue=3e-44,
Organism=Saccharomyces cerevisiae, GI6321053, Length=441, Percent_Identity=28.5714285714286, Blast_Score=174, Evalue=4e-44,
Organism=Saccharomyces cerevisiae, GI6320251, Length=424, Percent_Identity=26.4150943396226, Blast_Score=171, Evalue=2e-43,
Organism=Saccharomyces cerevisiae, GI6324924, Length=427, Percent_Identity=27.6346604215457, Blast_Score=170, Evalue=4e-43,
Organism=Saccharomyces cerevisiae, GI6319608, Length=434, Percent_Identity=24.1935483870968, Blast_Score=145, Evalue=1e-35,
Organism=Saccharomyces cerevisiae, GI6320364, Length=495, Percent_Identity=26.0606060606061, Blast_Score=141, Evalue=2e-34,
Organism=Drosophila melanogaster, GI45550968, Length=443, Percent_Identity=24.1534988713318, Blast_Score=69, Evalue=9e-12,
Organism=Drosophila melanogaster, GI19921172, Length=443, Percent_Identity=24.1534988713318, Blast_Score=69, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 52776; Mature: 52776

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS00218 AMINO_ACID_PERMEASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQSNTNRQNFQRKMQTRHLIMLSLGGVIGTGLFLSSGYTISQAGPAGTILAYLAGALIV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHH
YLVMLCLGELSVAMPVTGSFHMYASRFIGPGTGFTVAWLYWLTWAVALGSEFTAAGLLMQ
HHHHHHHCCCCEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
RWFPDTSVWMWSAVFAALIFALNAVSVRFFAESEFWFSSIKVLAIILFIILGGAAIFGII
HHCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHEEE
PIQNADAAPLLSNFAGEGGLFPNGFLPIFMAMLSVNFAFSGTELIGIAAGESAEPEKNIP
ECCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCEECCCEEEEEECCCCCCCCCCCH
KAIKTTLWRLVLFFIGTIFVLSCLIPVKEAGVIKSPFVDVFDRIGVPYAADIMNFVILTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
LLSAANSGLYACSRMLWSLSKEKTLHPVFQKLTSRGIPLNALIFSMLGGILSLLSSVFAP
HHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
DSVYIVLVSISGFAVVAVWMSIAASQFMFRRRFLAEGNTADDLKYRTPLYPAVPIAAFLL
CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
CLASCIGIAFDPNQRIALFCGVPFMALCYTIYYATNRKNSWNPSEPVKNASLHVSFSEYE
HHHHHHCCEECCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHH
EKKN
CCCC
>Mature Secondary Structure
MEQSNTNRQNFQRKMQTRHLIMLSLGGVIGTGLFLSSGYTISQAGPAGTILAYLAGALIV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHH
YLVMLCLGELSVAMPVTGSFHMYASRFIGPGTGFTVAWLYWLTWAVALGSEFTAAGLLMQ
HHHHHHHCCCCEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
RWFPDTSVWMWSAVFAALIFALNAVSVRFFAESEFWFSSIKVLAIILFIILGGAAIFGII
HHCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHEEE
PIQNADAAPLLSNFAGEGGLFPNGFLPIFMAMLSVNFAFSGTELIGIAAGESAEPEKNIP
ECCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCEECCCEEEEEECCCCCCCCCCCH
KAIKTTLWRLVLFFIGTIFVLSCLIPVKEAGVIKSPFVDVFDRIGVPYAADIMNFVILTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
LLSAANSGLYACSRMLWSLSKEKTLHPVFQKLTSRGIPLNALIFSMLGGILSLLSSVFAP
HHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
DSVYIVLVSISGFAVVAVWMSIAASQFMFRRRFLAEGNTADDLKYRTPLYPAVPIAAFLL
CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
CLASCIGIAFDPNQRIALFCGVPFMALCYTIYYATNRKNSWNPSEPVKNASLHVSFSEYE
HHHHHHCCEECCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHH
EKKN
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]