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The map label for this gene is cmpR [H]

Identifier: 52784052

GI number: 52784052

Start: 203932

End: 204828

Strand: Reverse

Name: cmpR [H]

Synonym: BLi00226

Alternate gene names: 52784052

Gene position: 204828-203932 (Counterclockwise)

Preceding gene: 52784057

Following gene: 52784051

Centisome position: 4.85

GC content: 44.82

Gene sequence:

>897_bases
ATGAATCTCCATGCACTGCGATTGTTCTATTCGGTCGCTGAAACAGGCAGTGTCACTCAAGCCGCCAAACAGTTAAGTAT
CAGCCAGCCCGCCGTCACCTCGCAAATTAAGAAATTAGAACGCGAGATCGACTGCACCTTATTCGTTCCTAAAGGCAGAG
GGATCCTGCTGACACAGTCCGGCGCAGAGCTTGCAAAACAGGCCAAGCGGCTGTTTTCACTTGAAAAAGAAATTGAATCG
TACGTGGAGCAGTTAAGGGAAGGGTCAATTGGAAAACTGCGTATTGCCTCCACCTTCCTCCCCGCCAATTATTTGCTGCC
AAGATGGCTCAGCCGATTTAAACAGCAATTTCCGAAAACGGAAGTTGAAATCACGACAACGAATTTTCAAAAAGCTTGTG
AACAGCTGATCAACTACGAAGCGGACATTGGCCTGATCGGCGGGACAACGGAATTCGGCCCCTTCTTAAAAGGAACGCTG
CTTTTGGAAGATGACATGTTATTCGTAGTCAATCAAAAACATAAATTCGCCTCAAAACACGTGGCATTAGAGGAGATTGT
AAAAGAACCTTTCGTCTTTCGCGAGGAAGGAAGTTTTTCGCGGGAAAAATTGATTTCGCTGTGCAACCTGCATAACGCGG
GAAAACCAAATATGGGTGTACAAATAAACGGATTAAACGAAACAATCAGAACGGTTATGGAAGGATACGGTGTAACATTC
GTATCCGCTCTTGAAGTAAACGAATATATCGCCCGCGGAGACATCGCAAAGGTTCATGTTGATAAAGCCGTAATAAAGAA
CCCGATTTCGCTATGTGTAAGGACGGAAGACCATCTATCTCCATCTGCCCTTAACTTTATTCAAATGATCGATTCGACCG
ATGAATATCCTCTATAA

Upstream 100 bases:

>100_bases
TACATGTTTTTCAACTTTATAATAGTAAAAGTATTTAGATAACTCTAATATATCTTTATCTAGTATTAATAACTTTTATT
TATAAATAGAGGTGTGAAAT

Downstream 100 bases:

>100_bases
CGGACGTCATCTCGATTTCCATTAAATGGGTTCTTTACAAAGCTCGACCGGCTGTGGAACGCCGTAAACTGCCGGGGGTT
GTACTGTTGAATATTATTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNLHALRLFYSVAETGSVTQAAKQLSISQPAVTSQIKKLEREIDCTLFVPKGRGILLTQSGAELAKQAKRLFSLEKEIES
YVEQLREGSIGKLRIASTFLPANYLLPRWLSRFKQQFPKTEVEITTTNFQKACEQLINYEADIGLIGGTTEFGPFLKGTL
LLEDDMLFVVNQKHKFASKHVALEEIVKEPFVFREEGSFSREKLISLCNLHNAGKPNMGVQINGLNETIRTVMEGYGVTF
VSALEVNEYIARGDIAKVHVDKAVIKNPISLCVRTEDHLSPSALNFIQMIDSTDEYPL

Sequences:

>Translated_298_residues
MNLHALRLFYSVAETGSVTQAAKQLSISQPAVTSQIKKLEREIDCTLFVPKGRGILLTQSGAELAKQAKRLFSLEKEIES
YVEQLREGSIGKLRIASTFLPANYLLPRWLSRFKQQFPKTEVEITTTNFQKACEQLINYEADIGLIGGTTEFGPFLKGTL
LLEDDMLFVVNQKHKFASKHVALEEIVKEPFVFREEGSFSREKLISLCNLHNAGKPNMGVQINGLNETIRTVMEGYGVTF
VSALEVNEYIARGDIAKVHVDKAVIKNPISLCVRTEDHLSPSALNFIQMIDSTDEYPL
>Mature_298_residues
MNLHALRLFYSVAETGSVTQAAKQLSISQPAVTSQIKKLEREIDCTLFVPKGRGILLTQSGAELAKQAKRLFSLEKEIES
YVEQLREGSIGKLRIASTFLPANYLLPRWLSRFKQQFPKTEVEITTTNFQKACEQLINYEADIGLIGGTTEFGPFLKGTL
LLEDDMLFVVNQKHKFASKHVALEEIVKEPFVFREEGSFSREKLISLCNLHNAGKPNMGVQINGLNETIRTVMEGYGVTF
VSALEVNEYIARGDIAKVHVDKAVIKNPISLCVRTEDHLSPSALNFIQMIDSTDEYPL

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=25.5102040816327, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=27.6, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1790399, Length=276, Percent_Identity=26.0869565217391, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI157672245, Length=226, Percent_Identity=28.3185840707965, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI145693105, Length=297, Percent_Identity=23.5690235690236, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790208, Length=245, Percent_Identity=25.3061224489796, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788296, Length=207, Percent_Identity=26.5700483091787, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082132, Length=147, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789204, Length=259, Percent_Identity=27.7992277992278, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787601, Length=156, Percent_Identity=28.2051282051282, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI2367136, Length=242, Percent_Identity=24.3801652892562, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786508, Length=141, Percent_Identity=28.3687943262411, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87081904, Length=282, Percent_Identity=23.0496453900709, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787530, Length=301, Percent_Identity=23.9202657807309, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788297, Length=177, Percent_Identity=27.1186440677966, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788887, Length=249, Percent_Identity=25.3012048192771, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33399; Mature: 33399

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLHALRLFYSVAETGSVTQAAKQLSISQPAVTSQIKKLEREIDCTLFVPKGRGILLTQS
CCHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCEEEEECC
GAELAKQAKRLFSLEKEIESYVEQLREGSIGKLRIASTFLPANYLLPRWLSRFKQQFPKT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHCCCC
EVEITTTNFQKACEQLINYEADIGLIGGTTEFGPFLKGTLLLEDDMLFVVNQKHKFASKH
EEEEEECHHHHHHHHHHCCCCCEEEECCCCHHCHHHCCEEEEECCEEEEECCCHHHHHHH
VALEEIVKEPFVFREEGSFSREKLISLCNLHNAGKPNMGVQINGLNETIRTVMEGYGVTF
HHHHHHHHCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHCCCCCE
VSALEVNEYIARGDIAKVHVDKAVIKNPISLCVRTEDHLSPSALNFIQMIDSTDEYPL
EHHHHHHHHHHCCCEEEEEHHHHHHHCHHHHEEECCCCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNLHALRLFYSVAETGSVTQAAKQLSISQPAVTSQIKKLEREIDCTLFVPKGRGILLTQS
CCHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCEEEEECC
GAELAKQAKRLFSLEKEIESYVEQLREGSIGKLRIASTFLPANYLLPRWLSRFKQQFPKT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHCCCC
EVEITTTNFQKACEQLINYEADIGLIGGTTEFGPFLKGTLLLEDDMLFVVNQKHKFASKH
EEEEEECHHHHHHHHHHCCCCCEEEECCCCHHCHHHCCEEEEECCEEEEECCCHHHHHHH
VALEEIVKEPFVFREEGSFSREKLISLCNLHNAGKPNMGVQINGLNETIRTVMEGYGVTF
HHHHHHHHCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHCCCCCE
VSALEVNEYIARGDIAKVHVDKAVIKNPISLCVRTEDHLSPSALNFIQMIDSTDEYPL
EHHHHHHHHHHCCCEEEEEHHHHHHHCHHHHEEECCCCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]