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The map label for this gene is yabR [H]

Identifier: 52783920

GI number: 52783920

Start: 74201

End: 74599

Strand: Direct

Name: yabR [H]

Synonym: BLi00076

Alternate gene names: 52783920

Gene position: 74201-74599 (Clockwise)

Preceding gene: 52783919

Following gene: 52783921

Centisome position: 1.76

GC content: 40.85

Gene sequence:

>399_bases
ATGTCGATTGAAGTTGGCAGCAAGTTGCAAGGGAAAGTAACAGGTATTACAAATTTCGGAGCGTTTGTTGAACTGCCTGG
AGGATCAACAGGTCTTGTTCATATCAGCGAAGTAGCCGATAACTACGTGAAGGACATTAATGATCATCTGAAGGTCGGTG
ATCAAGTAGAAGTTAAAGTTATTAATGTTGAGAAAGATGGGAAAATCGGCTTATCGATCAAAAAGGCTGTAGACCGTCCT
CAATCATCAAGACCTGCGAGACCTAAAAATGATTTCCGCTCTAAAGAAACGTTTGAACAGAAAATGAATAAGTTTTTAAA
AGACAGTGAAGATCGCTTATCGTCTCTAAAACGCAACACGGAATCAAAACGTGGAGGGCGCGGAGCAAGAAGAGGTTAA

Upstream 100 bases:

>100_bases
TTTGAAGATAAGAGCAAGTAGCCTTGTTGACACTTAATTTTTTCTTTATGTATAATTAAACAAATGATCTTTTTTAAGTC
TAAGGAGGAGCACTTTTTTT

Downstream 100 bases:

>100_bases
CTTGCTGCTTTCTATATAAACGAAAGGCATTCGTCTTATCCCAACGGATGCCTTTTTATTTTCTAATAAAATTTTTATTA
AAATTTCTATTGACGGATAG

Product: hypothetical protein

Products: RNAn; a nucleoside diphosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MSIEVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAVDRP
QSSRPARPKNDFRSKETFEQKMNKFLKDSEDRLSSLKRNTESKRGGRGARRG

Sequences:

>Translated_132_residues
MSIEVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAVDRP
QSSRPARPKNDFRSKETFEQKMNKFLKDSEDRLSSLKRNTESKRGGRGARRG
>Mature_131_residues
SIEVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAVDRPQ
SSRPARPKNDFRSKETFEQKMNKFLKDSEDRLSSLKRNTESKRGGRGARRG

Specific function: Involved In Mrna Degradation. Hydrolyzes Single-Stranded Polyribonucleotides Processively In The 3' To 5' Direction. Involved In The RNA Degradosome, A Multi-Enzyme Complex Important In RNA Processing And Messenger RNA Degradation. [C]

COG id: COG1098

COG function: function code J; Predicted RNA binding protein (contains ribosomal protein S1 domain)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI145693187, Length=79, Percent_Identity=51.8987341772152, Blast_Score=83, Evalue=5e-18,
Organism=Escherichia coli, GI87082262, Length=98, Percent_Identity=37.7551020408163, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1000 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 3328 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967 [H]

Pfam domain/function: PF00575 S1 [H]

EC number: 2.7.7.8 [C]

Molecular weight: Translated: 14556; Mature: 14425

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKV
CCCCCCCCCCCEEEEEECCCCEEECCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEE
INVEKDGKIGLSIKKAVDRPQSSRPARPKNDFRSKETFEQKMNKFLKDSEDRLSSLKRNT
EEECCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
ESKRGGRGARRG
CCCCCCCCCCCC
>Mature Secondary Structure 
SIEVGSKLQGKVTGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKV
CCCCCCCCCCEEEEEECCCCEEECCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEE
INVEKDGKIGLSIKKAVDRPQSSRPARPKNDFRSKETFEQKMNKFLKDSEDRLSSLKRNT
EEECCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
ESKRGGRGARRG
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): 4500 [C]

Specific activity: NA

Km value (mM): NA

Substrates: RNAn+1; phosphate [C]

Specific reaction: RNAn+1 + phosphate = RNAn + a nucleoside diphosphate [C]

General reaction: Nucleotidyl group transfer [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8113187; 7584024; 9384377 [H]