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The map label for this gene is yabO [H]

Identifier: 52783916

GI number: 52783916

Start: 72456

End: 72719

Strand: Direct

Name: yabO [H]

Synonym: BLi00072

Alternate gene names: 52783916

Gene position: 72456-72719 (Clockwise)

Preceding gene: 52783915

Following gene: 52783917

Centisome position: 1.72

GC content: 45.83

Gene sequence:

>264_bases
ATGAGACTCGACAAATTTCTCAAAGTATCAAGGCTGATTAAAAGACGGACGCTTGCAAAAGAAGTGGCTGACCAGGGAAG
AATTTCGATCAATGGCCAGCAGGCCAAAGCAAGCTCTGTTGTCAAAGCGGGGGACGAGCTTGCGGTGCGTTTCGGCCAAA
AACTTGTAACCGTCAAAGTCAATGAATTGAAGGATACGACAAAAAAAGAAGAAGCCGCTGATATGTATACCGTTCTCAAA
GAGGAGAAGCTGGGAGGAGAATAG

Upstream 100 bases:

>100_bases
ATCTGCAAAGCGCATGGGCAAGGATCTGGAAAGTATGACGCTTGAAGAAATGGACGAACTGTGGAATGAAGCGAAAGGCA
TTGAAAGGAGCTGACAAGCG

Downstream 100 bases:

>100_bases
GCTTGTTCTAAAAAAATCCCCCGTCTCATACAATGCAGTATCGAATCTTTAGTATGAGGATATGGGGGATGAATCGATGA
ATGTATATTATGATCAGCAC

Product: YabO

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQQAKASSVVKAGDELAVRFGQKLVTVKVNELKDTTKKEEAADMYTVLK
EEKLGGE

Sequences:

>Translated_87_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQQAKASSVVKAGDELAVRFGQKLVTVKVNELKDTTKKEEAADMYTVLK
EEKLGGE
>Mature_87_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQQAKASSVVKAGDELAVRFGQKLVTVKVNELKDTTKKEEAADMYTVLK
EEKLGGE

Specific function: Involved In The Recycling Of Free 50s Ribosomal Subunits That Still Carry A Nascent Chain. Binds RNA More Specifically Than DNA. Binds With Very High Affinity To The Free 50s Ribosomal Subunit. Does Not Bind It When It Is Part Of The 70s Ribosome. [C]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 9705; Mature: 9705

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQQAKASSVVKAGDELAVRFGQKLVTVKV
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCHHHHHHHCCCCEEEEH
NELKDTTKKEEAADMYTVLKEEKLGGE
HHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQQAKASSVVKAGDELAVRFGQKLVTVKV
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCHHHHHHHCCCCEEEEH
NELKDTTKKEEAADMYTVLKEEKLGGE
HHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]