Click here to switch to the map view.

The map label for this gene is yabD [H]

Identifier: 52783896

GI number: 52783896

Start: 51988

End: 52755

Strand: Direct

Name: yabD [H]

Synonym: BLi00052

Alternate gene names: 52783896

Gene position: 51988-52755 (Clockwise)

Preceding gene: 52783895

Following gene: 52783897

Centisome position: 1.23

GC content: 45.18

Gene sequence:

>768_bases
ATGTTATTTGATACACATGCTCATTTAAACGCCGAGCAATTTAACGAGGATTTGGAAGAAGTCATTGCTCGGGCAAAGGA
AGAAAAAGTGGAGCACATTGTCGTGGTAGGATTCGATCGTCCGACGATCAAGCGTGCGATGGAATTGATTGAAGAATACG
ATTTTATTTATGCAGCCATCGGGTGGCATCCGGTTGACGCAATTGATATGACCGATGAAGATTTGGCTTGGATCAAAGAC
CTGTCCGCCCATGAGAAAGTTGTGGCGATCGGAGAAATGGGACTTGATTATCATTGGGATAAGTCGCCGAAGGACGTTCA
AAAAGAGGTGTTCAGAAAACAGATCGCTTTGGCAAAAGAAGTCGGCTTGCCAATCGTGATTCACAACCGTGATGCAACGG
AGGATGTCGTTTCTATTTTGCGGGAAGAAGGGGCCGAGGAAGTCGGCGGGATCATGCACTGTTATACAGGAAGCGCTGAA
ATTGCACAAGAGTGCATCGATATGAATTTCTACCTATCTTTCGGCGGACCCGTCACATTTAAAAACGCCAAAAAACCGAA
GGAAGTGGTCAAACAAATACCAAATGACCGGCTTTTAATTGAGACGGACTGCCCGTATTTAACGCCGCATCCATACAGAG
GAAAGCGGAATGAACCTAGCTATGTCAAACTTGTCGCCGAACAGATTGCCGAATTAAAAGGAATGACTTATGAAGAAATA
GCGGCCGTCACCACAGAAAATGCAAAAAAACTTTTCGGCATCAGCTGA

Upstream 100 bases:

>100_bases
AACGCGAATCAAATAAATGCAGGCAAAGGGTGTTCCACGTGTAACATTTCGTCGAACACCTTTTGTTTTTTCGACAATTT
CTTAAAAAGGTGGCATTTTC

Downstream 100 bases:

>100_bases
CACGATTTGATATCGAGCCTTGTTCAAGCTTGTCTCTTCGGGGGATGGTTCTAAAAAGTTCTACATGTCTGTTTACGCTC
ATAGGATATCTTTGTCGACA

Product: YabD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MLFDTHAHLNAEQFNEDLEEVIARAKEEKVEHIVVVGFDRPTIKRAMELIEEYDFIYAAIGWHPVDAIDMTDEDLAWIKD
LSAHEKVVAIGEMGLDYHWDKSPKDVQKEVFRKQIALAKEVGLPIVIHNRDATEDVVSILREEGAEEVGGIMHCYTGSAE
IAQECIDMNFYLSFGGPVTFKNAKKPKEVVKQIPNDRLLIETDCPYLTPHPYRGKRNEPSYVKLVAEQIAELKGMTYEEI
AAVTTENAKKLFGIS

Sequences:

>Translated_255_residues
MLFDTHAHLNAEQFNEDLEEVIARAKEEKVEHIVVVGFDRPTIKRAMELIEEYDFIYAAIGWHPVDAIDMTDEDLAWIKD
LSAHEKVVAIGEMGLDYHWDKSPKDVQKEVFRKQIALAKEVGLPIVIHNRDATEDVVSILREEGAEEVGGIMHCYTGSAE
IAQECIDMNFYLSFGGPVTFKNAKKPKEVVKQIPNDRLLIETDCPYLTPHPYRGKRNEPSYVKLVAEQIAELKGMTYEEI
AAVTTENAKKLFGIS
>Mature_255_residues
MLFDTHAHLNAEQFNEDLEEVIARAKEEKVEHIVVVGFDRPTIKRAMELIEEYDFIYAAIGWHPVDAIDMTDEDLAWIKD
LSAHEKVVAIGEMGLDYHWDKSPKDVQKEVFRKQIALAKEVGLPIVIHNRDATEDVVSILREEGAEEVGGIMHCYTGSAE
IAQECIDMNFYLSFGGPVTFKNAKKPKEVVKQIPNDRLLIETDCPYLTPHPYRGKRNEPSYVKLVAEQIAELKGMTYEEI
AAVTTENAKKLFGIS

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=264, Percent_Identity=34.0909090909091, Blast_Score=150, Evalue=1e-36,
Organism=Homo sapiens, GI110349734, Length=264, Percent_Identity=34.0909090909091, Blast_Score=147, Evalue=6e-36,
Organism=Homo sapiens, GI226061853, Length=270, Percent_Identity=33.7037037037037, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI226061614, Length=253, Percent_Identity=33.201581027668, Blast_Score=136, Evalue=2e-32,
Organism=Homo sapiens, GI14042943, Length=271, Percent_Identity=29.1512915129151, Blast_Score=117, Evalue=9e-27,
Organism=Homo sapiens, GI226061595, Length=227, Percent_Identity=31.2775330396476, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI225903439, Length=249, Percent_Identity=28.5140562248996, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI225903424, Length=213, Percent_Identity=30.0469483568075, Blast_Score=100, Evalue=2e-21,
Organism=Escherichia coli, GI1787342, Length=258, Percent_Identity=41.4728682170543, Blast_Score=210, Evalue=8e-56,
Organism=Escherichia coli, GI48994985, Length=260, Percent_Identity=32.3076923076923, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI87082439, Length=255, Percent_Identity=29.0196078431373, Blast_Score=128, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI17559024, Length=280, Percent_Identity=33.9285714285714, Blast_Score=158, Evalue=3e-39,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=25.6603773584906, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17543026, Length=185, Percent_Identity=34.0540540540541, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17565396, Length=224, Percent_Identity=32.5892857142857, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24648690, Length=289, Percent_Identity=31.8339100346021, Blast_Score=135, Evalue=3e-32,
Organism=Drosophila melanogaster, GI221330018, Length=275, Percent_Identity=30.5454545454545, Blast_Score=114, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24586117, Length=275, Percent_Identity=30.5454545454545, Blast_Score=114, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28918; Mature: 28918

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFDTHAHLNAEQFNEDLEEVIARAKEEKVEHIVVVGFDRPTIKRAMELIEEYDFIYAAI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHEEEC
GWHPVDAIDMTDEDLAWIKDLSAHEKVVAIGEMGLDYHWDKSPKDVQKEVFRKQIALAKE
CCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VGLPIVIHNRDATEDVVSILREEGAEEVGGIMHCYTGSAEIAQECIDMNFYLSFGGPVTF
CCCEEEEECCCCHHHHHHHHHHHCHHHHCCEEEEECCCHHHHHHHHCCEEEEEECCEEEE
KNAKKPKEVVKQIPNDRLLIETDCPYLTPHPYRGKRNEPSYVKLVAEQIAELKGMTYEEI
CCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
AAVTTENAKKLFGIS
HHHHHHCHHHHCCCC
>Mature Secondary Structure
MLFDTHAHLNAEQFNEDLEEVIARAKEEKVEHIVVVGFDRPTIKRAMELIEEYDFIYAAI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHEEEC
GWHPVDAIDMTDEDLAWIKDLSAHEKVVAIGEMGLDYHWDKSPKDVQKEVFRKQIALAKE
CCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VGLPIVIHNRDATEDVVSILREEGAEEVGGIMHCYTGSAEIAQECIDMNFYLSFGGPVTF
CCCEEEEECCCCHHHHHHHHHHHCHHHHCCEEEEECCCHHHHHHHHCCEEEEEECCEEEE
KNAKKPKEVVKQIPNDRLLIETDCPYLTPHPYRGKRNEPSYVKLVAEQIAELKGMTYEEI
CCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
AAVTTENAKKLFGIS
HHHHHHCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]