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The map label for this gene is lsrR [H]

Identifier: 52142545

GI number: 52142545

Start: 2816035

End: 2816967

Strand: Direct

Name: lsrR [H]

Synonym: BCZK2697

Alternate gene names: 52142545

Gene position: 2816035-2816967 (Clockwise)

Preceding gene: 52142550

Following gene: 52142544

Centisome position: 53.12

GC content: 38.37

Gene sequence:

>933_bases
ATGACTCAGCTGAACTTTGAAGAGAATTTATTAACGAAAGTAGCTTGGTACTATTATAAGGACCAATTAACACAACAGGA
GATCGCTTCACTTCTTCATATTTCAAGAAATAAAGTCGTCCGGTTATTAGATAAGGCGCGGAGTGAAGGTATCGTTACAT
TTCACGTAAAAGGGACTGGTTTGCACTGTTTAAGTATTGAGCGTGACTTAATGAAAAAGTTCTACTTAAAAGATGCTTTT
ATTATCCCGACCCCAGTAAACAATTATCACGATTCTCTCGGAAAAGCTGCTGCACAATATTTAGAAACTCAGCTCCAGCA
AGGAGATTTACTCGGTATTGGCTGGGGAGAAACAATTAGCAAAATGCTAGAAAACATTCATTTCGAAAGTTCTATTAATC
TCTCAATCGTAACGTTAACAGGCGGAGTAAATCACTATCTCCCGAGAAAACAAAACTATTTACATTACATGCAAGGTAAT
CTTCACATTATCCCTACGCCGTTTCTAGCGTCTACAACCGAAATGGCACAAAGTATTTTATCAGAACCGAGTGTAAAAGA
TATGCTTCATGTCGCTTCACTTGCTCATACGGCTGTTGTCGGTATTGGAGGACTATCTCAAGAGGCTACGATTGTAAAAG
AAGAAAAATTAACTTTACGTGAGATGACATATATTCGTAGCCAAAACGGTGCTGGCGATATTTTAGGTCAGTTTTATGAT
ACAAATGGCGATTTATTAGAGCTCTCGCATCACAATCGTCTAATTGGCACGCCCCTCTCTGTTTTGCGCAATATGAAGCA
TGTCGTCGGTGTTGCTGGAGGTACTGAAAAGATAAATGCAATTTATGGTGCCTTAAAAGGAAAGTTTATTCATACATTAA
TTACCGATGAGGAAACTGCCCTTTCCTTATTACGAAAGGATGGTGATTGTTAA

Upstream 100 bases:

>100_bases
ACACTTTTTTCTACGTACTATTAATCGCTTCAACTGGAATAAACAAAATATATGGTACATATGTTTAAGCTGTGGTCAAT
TGTTGAAAGGGATGAAGAGT

Downstream 100 bases:

>100_bases
TGTCCAATTTATTAGCTTTCGATGCTGGTACAGGAAGTATTCGAGCAGTTCTTTTTGATTTACATGGTAATCAAATTGCA
GTAAGTCAAAAAGAATGGAT

Product: deoxyribonucleoside regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MTQLNFEENLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVTFHVKGTGLHCLSIERDLMKKFYLKDAF
IIPTPVNNYHDSLGKAAAQYLETQLQQGDLLGIGWGETISKMLENIHFESSINLSIVTLTGGVNHYLPRKQNYLHYMQGN
LHIIPTPFLASTTEMAQSILSEPSVKDMLHVASLAHTAVVGIGGLSQEATIVKEEKLTLREMTYIRSQNGAGDILGQFYD
TNGDLLELSHHNRLIGTPLSVLRNMKHVVGVAGGTEKINAIYGALKGKFIHTLITDEETALSLLRKDGDC

Sequences:

>Translated_310_residues
MTQLNFEENLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVTFHVKGTGLHCLSIERDLMKKFYLKDAF
IIPTPVNNYHDSLGKAAAQYLETQLQQGDLLGIGWGETISKMLENIHFESSINLSIVTLTGGVNHYLPRKQNYLHYMQGN
LHIIPTPFLASTTEMAQSILSEPSVKDMLHVASLAHTAVVGIGGLSQEATIVKEEKLTLREMTYIRSQNGAGDILGQFYD
TNGDLLELSHHNRLIGTPLSVLRNMKHVVGVAGGTEKINAIYGALKGKFIHTLITDEETALSLLRKDGDC
>Mature_309_residues
TQLNFEENLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVTFHVKGTGLHCLSIERDLMKKFYLKDAFI
IPTPVNNYHDSLGKAAAQYLETQLQQGDLLGIGWGETISKMLENIHFESSINLSIVTLTGGVNHYLPRKQNYLHYMQGNL
HIIPTPFLASTTEMAQSILSEPSVKDMLHVASLAHTAVVGIGGLSQEATIVKEEKLTLREMTYIRSQNGAGDILGQFYDT
NGDLLELSHHNRLIGTPLSVLRNMKHVVGVAGGTEKINAIYGALKGKFIHTLITDEETALSLLRKDGDC

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsr operon and its own transcription. In the presence of AI-2, lsrR is inactivated by binding phospho-AI-2, leading to the transcriptio

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=304, Percent_Identity=38.4868421052632, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI87082414, Length=312, Percent_Identity=25.6410256410256, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34560; Mature: 34429

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLNFEENLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVTFHVKGTG
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
LHCLSIERDLMKKFYLKDAFIIPTPVNNYHDSLGKAAAQYLETQLQQGDLLGIGWGETIS
EEEEHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHH
KMLENIHFESSINLSIVTLTGGVNHYLPRKQNYLHYMQGNLHIIPTPFLASTTEMAQSIL
HHHHHCCCCCCCCEEEEEEECCCHHCCCCCCCCCEEECCCEEEECCCHHHHHHHHHHHHH
SEPSVKDMLHVASLAHTAVVGIGGLSQEATIVKEEKLTLREMTYIRSQNGAGDILGQFYD
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEC
TNGDLLELSHHNRLIGTPLSVLRNMKHVVGVAGGTEKINAIYGALKGKFIHTLITDEETA
CCCCEEEECCCCCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCHHH
LSLLRKDGDC
HHHHHCCCCC
>Mature Secondary Structure 
TQLNFEENLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVTFHVKGTG
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
LHCLSIERDLMKKFYLKDAFIIPTPVNNYHDSLGKAAAQYLETQLQQGDLLGIGWGETIS
EEEEHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHH
KMLENIHFESSINLSIVTLTGGVNHYLPRKQNYLHYMQGNLHIIPTPFLASTTEMAQSIL
HHHHHCCCCCCCCEEEEEEECCCHHCCCCCCCCCEEECCCEEEECCCHHHHHHHHHHHHH
SEPSVKDMLHVASLAHTAVVGIGGLSQEATIVKEEKLTLREMTYIRSQNGAGDILGQFYD
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEC
TNGDLLELSHHNRLIGTPLSVLRNMKHVVGVAGGTEKINAIYGALKGKFIHTLITDEETA
CCCCEEEECCCCCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCHHH
LSLLRKDGDC
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA