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The map label for this gene is ybiR [C]

Identifier: 52142383

GI number: 52142383

Start: 2979506

End: 2980735

Strand: Direct

Name: ybiR [C]

Synonym: BCZK2859

Alternate gene names: 52142383

Gene position: 2979506-2980735 (Clockwise)

Preceding gene: 52142395

Following gene: 52142381

Centisome position: 56.21

GC content: 30.41

Gene sequence:

>1230_bases
ATGACATCCTCTTTTCTAGCAATATCGAGTTATCCCAAAAAACGTATATTTACTAACATAGATTACAGGTGGTGTATTGT
GAAAGAAATAGTATTCGTTCAAAATAAAAAAAGACTCCTTATGAAATTCGAATTTTTAAAAAAGGATTTAGTACTTACCA
TTTCACTGATACTAGCAATTGTAAGCTGCTTAATACATTCGCCAAAGATCGAATATATTAACTTTGAAGTGTTAATTAGC
TTATTTAATCTAATGGTGGCCATTAAGGCCTTGGAACAGCTAAAGATATTAGACAAACTTGCCGTTGCGATTTTAAATAA
ATGCAATAACAGCAGGTCAATATCTATTATTCTAATTTTGTTATGCTTTATTTGCTCCATGTTTGTAACAAATGATGTTG
CTCTCCCCACTTTTGTACCAATAACACTTGTCATTAGTAAAAAAACACAAATGAACATGATGGATACAATCATCCTGCAG
ACAATTGCGGCAAACATCGGTAGTAGCTTGATGCCCATGGGAAACCCACAAAATTTATACCTATATTCTTACTATGGAAT
TAAGCTCATCCCATTTTTAGGTTCAATTCTGCTTTTAGCTGTACTTGGAATTAGTTTATTATTTATATTTACTCAAAAAC
TTCAAAAAACAGATTTGAAAATAGAACTACCTGTTATTACCGTGAAAAATCGAAAAAAAGCTACCGTCTGGATTTTGATA
CTTATCACTATCATTGCATCTATTTTTGGTGTCATTAATTATTACATTGCACTAATAGTCACATTGATAGCGGCATTTAC
GTTAGATAGAAAGTTACTATTTAAGATCGATTACTTTCTTCTAATAACCTTTGTCTGTTTTTTTATTTTCATCGGAAACA
TTTCACATTCGGATGCACTGGAGACATTTGCTCGCGCTAATTTAAGAGGAGATACTTCATTCTTCTTTAGTTCCATATTT
TTGAGTCAATTGATTAGCAATTTTCCTACTTCAATTCTTCTATCAAACTTTACTTCTGATTGGAAAGCTTTATTACTAGG
AGTAAATATTGGAGGGCTTGGAACAATTATCGCATCTTTAGCCAGTGTAATTTCCTATAAACTATTCACTCAAGCCAATG
GTAAAGAGAGTAAAGCTTATTTAATTAAATTTAGCATTTACAACTTTTCATTTTTAATCATACTTACATGTATACAATAC
TTTATGTTTAAATTTCTAAAAATTTTTTAA

Upstream 100 bases:

>100_bases
GGGTTCGTCTATATTGCACATATTTACAACATTAAAGACACTAAGAAAAAAGGATTTTGTTGAAGGGATGAAACATTGCA
AAACTCTTATTTAGGACCTT

Downstream 100 bases:

>100_bases
AAAATTGATTACTTTAGAAAAACCCAAATATCTCAGCATTCAATTGAGAAATTTGGGTTTTAATATAGGTATGTTTAAAG
AGATACAACAAAGTTACCAT

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MTSSFLAISSYPKKRIFTNIDYRWCIVKEIVFVQNKKRLLMKFEFLKKDLVLTISLILAIVSCLIHSPKIEYINFEVLIS
LFNLMVAIKALEQLKILDKLAVAILNKCNNSRSISIILILLCFICSMFVTNDVALPTFVPITLVISKKTQMNMMDTIILQ
TIAANIGSSLMPMGNPQNLYLYSYYGIKLIPFLGSILLLAVLGISLLFIFTQKLQKTDLKIELPVITVKNRKKATVWILI
LITIIASIFGVINYYIALIVTLIAAFTLDRKLLFKIDYFLLITFVCFFIFIGNISHSDALETFARANLRGDTSFFFSSIF
LSQLISNFPTSILLSNFTSDWKALLLGVNIGGLGTIIASLASVISYKLFTQANGKESKAYLIKFSIYNFSFLIILTCIQY
FMFKFLKIF

Sequences:

>Translated_409_residues
MTSSFLAISSYPKKRIFTNIDYRWCIVKEIVFVQNKKRLLMKFEFLKKDLVLTISLILAIVSCLIHSPKIEYINFEVLIS
LFNLMVAIKALEQLKILDKLAVAILNKCNNSRSISIILILLCFICSMFVTNDVALPTFVPITLVISKKTQMNMMDTIILQ
TIAANIGSSLMPMGNPQNLYLYSYYGIKLIPFLGSILLLAVLGISLLFIFTQKLQKTDLKIELPVITVKNRKKATVWILI
LITIIASIFGVINYYIALIVTLIAAFTLDRKLLFKIDYFLLITFVCFFIFIGNISHSDALETFARANLRGDTSFFFSSIF
LSQLISNFPTSILLSNFTSDWKALLLGVNIGGLGTIIASLASVISYKLFTQANGKESKAYLIKFSIYNFSFLIILTCIQY
FMFKFLKIF
>Mature_408_residues
TSSFLAISSYPKKRIFTNIDYRWCIVKEIVFVQNKKRLLMKFEFLKKDLVLTISLILAIVSCLIHSPKIEYINFEVLISL
FNLMVAIKALEQLKILDKLAVAILNKCNNSRSISIILILLCFICSMFVTNDVALPTFVPITLVISKKTQMNMMDTIILQT
IAANIGSSLMPMGNPQNLYLYSYYGIKLIPFLGSILLLAVLGISLLFIFTQKLQKTDLKIELPVITVKNRKKATVWILIL
ITIIASIFGVINYYIALIVTLIAAFTLDRKLLFKIDYFLLITFVCFFIFIGNISHSDALETFARANLRGDTSFFFSSIFL
SQLISNFPTSILLSNFTSDWKALLLGVNIGGLGTIIASLASVISYKLFTQANGKESKAYLIKFSIYNFSFLIILTCIQYF
MFKFLKIF

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=338, Percent_Identity=26.3313609467456, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 46393; Mature: 46262

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSFLAISSYPKKRIFTNIDYRWCIVKEIVFVQNKKRLLMKFEFLKKDLVLTISLILAI
CCCCEEECCCCCCHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
VSCLIHSPKIEYINFEVLISLFNLMVAIKALEQLKILDKLAVAILNKCNNSRSISIILIL
HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LCFICSMFVTNDVALPTFVPITLVISKKTQMNMMDTIILQTIAANIGSSLMPMGNPQNLY
HHHHHHHHHHCCCCCCHHHHEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
LYSYYGIKLIPFLGSILLLAVLGISLLFIFTQKLQKTDLKIELPVITVKNRKKATVWILI
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHH
LITIIASIFGVINYYIALIVTLIAAFTLDRKLLFKIDYFLLITFVCFFIFIGNISHSDAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ETFARANLRGDTSFFFSSIFLSQLISNFPTSILLSNFTSDWKALLLGVNIGGLGTIIASL
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHEECCCCHHHHHHHHH
ASVISYKLFTQANGKESKAYLIKFSIYNFSFLIILTCIQYFMFKFLKIF
HHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
TSSFLAISSYPKKRIFTNIDYRWCIVKEIVFVQNKKRLLMKFEFLKKDLVLTISLILAI
CCCEEECCCCCCHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
VSCLIHSPKIEYINFEVLISLFNLMVAIKALEQLKILDKLAVAILNKCNNSRSISIILIL
HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LCFICSMFVTNDVALPTFVPITLVISKKTQMNMMDTIILQTIAANIGSSLMPMGNPQNLY
HHHHHHHHHHCCCCCCHHHHEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
LYSYYGIKLIPFLGSILLLAVLGISLLFIFTQKLQKTDLKIELPVITVKNRKKATVWILI
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHH
LITIIASIFGVINYYIALIVTLIAAFTLDRKLLFKIDYFLLITFVCFFIFIGNISHSDAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ETFARANLRGDTSFFFSSIFLSQLISNFPTSILLSNFTSDWKALLLGVNIGGLGTIIASL
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHEECCCCHHHHHHHHH
ASVISYKLFTQANGKESKAYLIKFSIYNFSFLIILTCIQYFMFKFLKIF
HHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]