Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

Click here to switch to the map view.

The map label for this gene is 51893944

Identifier: 51893944

GI number: 51893944

Start: 3018665

End: 3018973

Strand: Reverse

Name: 51893944

Synonym: STH2806

Alternate gene names: NA

Gene position: 3018973-3018665 (Counterclockwise)

Preceding gene: 51893945

Following gene: 51893943

Centisome position: 84.66

GC content: 62.78

Gene sequence:

>309_bases
ATGGCGGATGTGCAGTCGTATCAGAAATGCTTGACAGATTATTGTCCACTGCCCCATTATCGTAACTGGGTGCCAACCCC
GGGCGGCCCGGGTTGGCAGCCGGGACCGACGGAGGGGGAGGGCCTCGGAATGGCTGGATTCCTTGTCGCGCTGCTCTGGC
TCGCTTCCATCTTGATTTTCCTGTGGATCTGGGACGACGCGACGCGGCGGCACGGCCAGAACATCGGGTGCCTCTGGGCC
CTGGCGGTGCTGGCACTGGGGCCGATCGCGATCATCGCCTACTTCCTGTTCGGGCGTTCCGAGAACTAG

Upstream 100 bases:

>100_bases
CAGACCGGGCGCGCCTCGTTACAGAGGCCGCCCGGTTCATCTTTGCAGGCTTCGTCTTCGCCGGTCCGAGCCCTGTCCAT
CGCATGCTCCCCCGCTGCGC

Downstream 100 bases:

>100_bases
GGATCAACCCCCGCCCCTCGGTGGGCGGGGAACTTTGTGTGCAGGCGGCTTCGCCTTATTCGCTGTTCAAATCGATTTGA
TTCGTTTTTTTGTCTTGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 101

Protein sequence:

>102_residues
MADVQSYQKCLTDYCPLPHYRNWVPTPGGPGWQPGPTEGEGLGMAGFLVALLWLASILIFLWIWDDATRRHGQNIGCLWA
LAVLALGPIAIIAYFLFGRSEN

Sequences:

>Translated_102_residues
MADVQSYQKCLTDYCPLPHYRNWVPTPGGPGWQPGPTEGEGLGMAGFLVALLWLASILIFLWIWDDATRRHGQNIGCLWA
LAVLALGPIAIIAYFLFGRSEN
>Mature_101_residues
ADVQSYQKCLTDYCPLPHYRNWVPTPGGPGWQPGPTEGEGLGMAGFLVALLWLASILIFLWIWDDATRRHGQNIGCLWAL
AVLALGPIAIIAYFLFGRSEN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11289; Mature: 11158

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADVQSYQKCLTDYCPLPHYRNWVPTPGGPGWQPGPTEGEGLGMAGFLVALLWLASILIF
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LWIWDDATRRHGQNIGCLWALAVLALGPIAIIAYFLFGRSEN
HHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ADVQSYQKCLTDYCPLPHYRNWVPTPGGPGWQPGPTEGEGLGMAGFLVALLWLASILIF
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LWIWDDATRRHGQNIGCLWALAVLALGPIAIIAYFLFGRSEN
HHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA