Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

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The map label for this gene is cysU [C]

Identifier: 51893889

GI number: 51893889

Start: 2968730

End: 2970433

Strand: Reverse

Name: cysU [C]

Synonym: STH2751

Alternate gene names: 51893889

Gene position: 2970433-2968730 (Counterclockwise)

Preceding gene: 51893890

Following gene: 51893888

Centisome position: 83.3

GC content: 65.61

Gene sequence:

>1704_bases
GTGGCAGCCAAGTGGAATGACAGGTGGCAGCGGATCACCGCGTCGCCCTACTTCGTGTACGTGATCGTCGCCCCCCTGGC
CCTGGTGCTGTGGGGCTACGTGGTGCAGCCCATGCTGGCCACCTTCCTTGCCAGTGTCCAGGACAGCTCCGGTTTCACCC
TGAAGTACTACAGGGGTTTCTTCAGCCTGAACAGCACGCAGATGGAGGCGCTGCTCACCACGGTCGGCATCTCGGTGCTC
AGCGTCATCACCTGTGCCGTCGTCGGCGTGAGCATGGCCGTCCTGCTCAACCGGTTCGAGTTCCCCGGGCGCCGCCTGCT
GGAGAGCCTGATCCTGGTGCCCATGGCGCTGCCGCCGCTGATCGGCATCTACGCCTTCCAGTTCCTCTACTCGTCCAGCG
GCATCATCCCCCGGGCGCTCAAGGTGCTCTTCGACCTGCCCCAGGTCCCCTTCGCCCTGAAGGGGCTCACCGGCGTGCTG
GTGGTACACACCTTCACCATGTATCCCTACTTCTACACCTCCGCGGCGGCGGCCCTGGCCGGATTCGACCCCTCGCTGGA
GGAGGCGGCGTACAACCTGGGCGCCCGGCGCTGGCAGGTCTGGACCCGGGTGCTGCTGCCGATGCTGACCCCGGCCCTGG
TGGCGGGCTCGCTGCTCACCTTCATGGTCTCCATGGCCTCGTACACTGCACCGCTGATCTTCGGCGTCGACCGGATCATG
ACCATGCAGATCGCCATCGCCCGCACCAACGGCGACCTGGCGCTGGCTTCGGCGGAGGCGACGGTCCTTTCGGTGGTCTC
CATCGCCTTCCTGGTCCTCATGCGCTGGTACCAGAACCGGCGCACCTACCGTTCCCTCTCCAAGGGCGTCTCGGTGCACC
GCACCGAGGTCAAGAGCCCGGTGGGCAAGATCCTGGCCATGGTGGCCTCCATCTTCGGCACGCTGATTCTCATCCTGCCC
GTCCTCGTCCTCGTCCTGGTCTCGTTCTCCAAGGACGGCTCCTGGACCGTGCAGGTGCTGCCGCCCAAGTACACGCTGGA
CAACTACATCACCCTCTTCACCAGCTCGCGGGCATGGCGGCCCATCCGGAACAGCCTGGCGATGAGCGCCCTCGCGACCG
TGGGCTCCATCCTGCTGGGCGTGGCCGCGGCCTATGCCCTGAACCGGTTCAAGTTCAAGGGCAAGTCGCTGCTGGACGTG
GCCGTCATGATTCCCTGGGCCCTGCCCGGCACGGTGGTCGCGATCAACCTGATCGCCGCCTTCAACCAGCCTTCGGTCTT
CACCTTCGGCAAGGTGATCGTGGGCACGTTCTGGATCCTGCCCCTGGCCTACTTCGTCCGCTTCTCGCCGCTGGTCTTCC
GCTCCACCAATGCCACGCTGGCGCAGCTGGACCCGTCGGTGGAAGAAGCGGCCCGCAGCCTCGGCGCCACGTGGTGGTAC
TCGTTCCGCCGGGTCACCTTCCCGCTGATGTTCCGCGGCGTCCTGGCCGGTGCCCTGATGGCCTTCGTCCAGGGCGTGGG
CGAGTTCGTGGCGTCGGTGCTCATCTACACGGCCCGGAACCAGCCGATCTCGGTGGAGATCAACAACCTCATGTACTCGT
TCAAGTTCGGCACCGCGGCCGCCTACGGTTTGCTGCAGATGCTCCTGATCCTGGTCGCCATCTACATCTCCAACCGCCTG
GAACAGAGGCAGAACCTCGCCTAA

Upstream 100 bases:

>100_bases
TCGCCTCGTCGGCCGACCGGTACGGCGAGGTGCGGCGGCCCGGGGATCCCATCCACCTGTACATCCCGCCTGAGCGAGTC
TATCTGGTGGAGTGATGAAG

Downstream 100 bases:

>100_bases
GGAAGTGATCGCGTTGACCCGCAATCCGAACCCGGCCGGGGCCGCCAACGACCCGTGCCGGAACGAATCCGCCGCACCGC
ACGCAGGGGCCGCATCCACC

Product: ABC transporter permease protein

Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 566

Protein sequence:

>567_residues
MAAKWNDRWQRITASPYFVYVIVAPLALVLWGYVVQPMLATFLASVQDSSGFTLKYYRGFFSLNSTQMEALLTTVGISVL
SVITCAVVGVSMAVLLNRFEFPGRRLLESLILVPMALPPLIGIYAFQFLYSSSGIIPRALKVLFDLPQVPFALKGLTGVL
VVHTFTMYPYFYTSAAAALAGFDPSLEEAAYNLGARRWQVWTRVLLPMLTPALVAGSLLTFMVSMASYTAPLIFGVDRIM
TMQIAIARTNGDLALASAEATVLSVVSIAFLVLMRWYQNRRTYRSLSKGVSVHRTEVKSPVGKILAMVASIFGTLILILP
VLVLVLVSFSKDGSWTVQVLPPKYTLDNYITLFTSSRAWRPIRNSLAMSALATVGSILLGVAAAYALNRFKFKGKSLLDV
AVMIPWALPGTVVAINLIAAFNQPSVFTFGKVIVGTFWILPLAYFVRFSPLVFRSTNATLAQLDPSVEEAARSLGATWWY
SFRRVTFPLMFRGVLAGALMAFVQGVGEFVASVLIYTARNQPISVEINNLMYSFKFGTAAAYGLLQMLLILVAIYISNRL
EQRQNLA

Sequences:

>Translated_567_residues
MAAKWNDRWQRITASPYFVYVIVAPLALVLWGYVVQPMLATFLASVQDSSGFTLKYYRGFFSLNSTQMEALLTTVGISVL
SVITCAVVGVSMAVLLNRFEFPGRRLLESLILVPMALPPLIGIYAFQFLYSSSGIIPRALKVLFDLPQVPFALKGLTGVL
VVHTFTMYPYFYTSAAAALAGFDPSLEEAAYNLGARRWQVWTRVLLPMLTPALVAGSLLTFMVSMASYTAPLIFGVDRIM
TMQIAIARTNGDLALASAEATVLSVVSIAFLVLMRWYQNRRTYRSLSKGVSVHRTEVKSPVGKILAMVASIFGTLILILP
VLVLVLVSFSKDGSWTVQVLPPKYTLDNYITLFTSSRAWRPIRNSLAMSALATVGSILLGVAAAYALNRFKFKGKSLLDV
AVMIPWALPGTVVAINLIAAFNQPSVFTFGKVIVGTFWILPLAYFVRFSPLVFRSTNATLAQLDPSVEEAARSLGATWWY
SFRRVTFPLMFRGVLAGALMAFVQGVGEFVASVLIYTARNQPISVEINNLMYSFKFGTAAAYGLLQMLLILVAIYISNRL
EQRQNLA
>Mature_566_residues
AAKWNDRWQRITASPYFVYVIVAPLALVLWGYVVQPMLATFLASVQDSSGFTLKYYRGFFSLNSTQMEALLTTVGISVLS
VITCAVVGVSMAVLLNRFEFPGRRLLESLILVPMALPPLIGIYAFQFLYSSSGIIPRALKVLFDLPQVPFALKGLTGVLV
VHTFTMYPYFYTSAAAALAGFDPSLEEAAYNLGARRWQVWTRVLLPMLTPALVAGSLLTFMVSMASYTAPLIFGVDRIMT
MQIAIARTNGDLALASAEATVLSVVSIAFLVLMRWYQNRRTYRSLSKGVSVHRTEVKSPVGKILAMVASIFGTLILILPV
LVLVLVSFSKDGSWTVQVLPPKYTLDNYITLFTSSRAWRPIRNSLAMSALATVGSILLGVAAAYALNRFKFKGKSLLDVA
VMIPWALPGTVVAINLIAAFNQPSVFTFGKVIVGTFWILPLAYFVRFSPLVFRSTNATLAQLDPSVEEAARSLGATWWYS
FRRVTFPLMFRGVLAGALMAFVQGVGEFVASVLIYTARNQPISVEINNLMYSFKFGTAAAYGLLQMLLILVAIYISNRLE
QRQNLA

Specific function: Probably part of the binding-protein-dependent transport system y4fNOP. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1178

COG function: function code P; ABC-type Fe3+ transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI1788764, Length=204, Percent_Identity=32.843137254902, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI87082099, Length=243, Percent_Identity=24.2798353909465, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787369, Length=284, Percent_Identity=27.112676056338, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1786980, Length=172, Percent_Identity=31.3953488372093, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787368, Length=175, Percent_Identity=27.4285714285714, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 62420; Mature: 62289

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKWNDRWQRITASPYFVYVIVAPLALVLWGYVVQPMLATFLASVQDSSGFTLKYYRGF
CCCCCCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEEHHH
FSLNSTQMEALLTTVGISVLSVITCAVVGVSMAVLLNRFEFPGRRLLESLILVPMALPPL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IGIYAFQFLYSSSGIIPRALKVLFDLPQVPFALKGLTGVLVVHTFTMYPYFYTSAAAALA
HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFDPSLEEAAYNLGARRWQVWTRVLLPMLTPALVAGSLLTFMVSMASYTAPLIFGVDRIM
CCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMQIAIARTNGDLALASAEATVLSVVSIAFLVLMRWYQNRRTYRSLSKGVSVHRTEVKSP
HEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VGKILAMVASIFGTLILILPVLVLVLVSFSKDGSWTVQVLPPKYTLDNYITLFTSSRAWR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEECCCCCH
PIRNSLAMSALATVGSILLGVAAAYALNRFKFKGKSLLDVAVMIPWALPGTVVAINLIAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
FNQPSVFTFGKVIVGTFWILPLAYFVRFSPLVFRSTNATLAQLDPSVEEAARSLGATWWY
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCCCHHHHHHHHCHHHHH
SFRRVTFPLMFRGVLAGALMAFVQGVGEFVASVLIYTARNQPISVEINNLMYSFKFGTAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHEEEEEECHHHH
AYGLLQMLLILVAIYISNRLEQRQNLA
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AAKWNDRWQRITASPYFVYVIVAPLALVLWGYVVQPMLATFLASVQDSSGFTLKYYRGF
CCCCCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEEHHH
FSLNSTQMEALLTTVGISVLSVITCAVVGVSMAVLLNRFEFPGRRLLESLILVPMALPPL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IGIYAFQFLYSSSGIIPRALKVLFDLPQVPFALKGLTGVLVVHTFTMYPYFYTSAAAALA
HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFDPSLEEAAYNLGARRWQVWTRVLLPMLTPALVAGSLLTFMVSMASYTAPLIFGVDRIM
CCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMQIAIARTNGDLALASAEATVLSVVSIAFLVLMRWYQNRRTYRSLSKGVSVHRTEVKSP
HEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VGKILAMVASIFGTLILILPVLVLVLVSFSKDGSWTVQVLPPKYTLDNYITLFTSSRAWR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEECCCCCH
PIRNSLAMSALATVGSILLGVAAAYALNRFKFKGKSLLDVAVMIPWALPGTVVAINLIAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
FNQPSVFTFGKVIVGTFWILPLAYFVRFSPLVFRSTNATLAQLDPSVEEAARSLGATWWY
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCCCHHHHHHHHCHHHHH
SFRRVTFPLMFRGVLAGALMAFVQGVGEFVASVLIYTARNQPISVEINNLMYSFKFGTAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHEEEEEECHHHH
AYGLLQMLLILVAIYISNRLEQRQNLA
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]

Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]